Table 4.
Comparison of results for selected up-regulated genes determined by Affymetrix/S score and RQ-PCR.
| Gene Description | Ingenuty Name | Affymetrix Probe Set | S Score | Fold RQ-PCR | Network | Location |
|---|---|---|---|---|---|---|
| Interleukin-8 | IL8 | 211506_s_at | 11.393 | 59.4 ± 15.5 | See Figure 3 | Extra-cellular |
| ATPase, Na+/K+ transporting, Beta 1 polypeptide | ATP1B1 | 201242_s_at | 7.184 | 4.5 ± 1.8 | 10 | Plasma Membrane |
| Syndecan 4 | SDC4 | 202071_at | 8.823 | 4.0 ± 0.84 | 5 | Plasma Membrane |
| Retinoic acid receptor responder (tazarotene induced) 1 | RARRES1 | 221872_at | 6.179 | 2.4± 0.7 | 8 | Plasma Membrane |
| tumor necrosis factor, alpha-induced protein 3 | TNIP1 | 207196_s_at | 9.344 | 2.0 ± 0.2 | See Figure 3 | Nucleus |
| nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha | NFKBIA | 201502_s_at | 10.956 | 4.0 ± 1.2. | See Figure 3 | Cytoplasm |
| Matrix Metallo-peptidase 7 | MMP7 | 202644_s_at | 9.812 | 2.1 ± 4.2 | 9 & See Additional file 3 | Extra-cellular |
For each gene ingenuity description, name and Affymetrix probe set, assigned network and cellular location are shown together with the S score and fold RQ-PCR change compared to β-actin control.