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. 2009 Feb 17;37(7):2116–2125. doi: 10.1093/nar/gkp057

Table 1.

Nucleotide sequences of oligonucleotides

Designation Sequence Enzyme tested
5-foU/N 5′-GGTCGACTFAAGGTACC KsgA,
3′-CCAGCTGANTTCCATGG     MutY
Tg/N 5′-GGACGACAXAAGGAACC KsgA
3′-CCTGCTGTNTTCCTTGG
5-hmU/C 5′-GATCCTCTAGAGHCGACCTGCA KsgA
3′-CTAGGAGATCACCGCTGGACGT
8-oxoG/C 5′-GAACTAGTG8ATCCCCCGGGCTGC KsgA
3′-CTTGATCACCTAGGGGGCCCGACG
2-ohA/C 5′-GAACTAGTG2ATCCCCCGGGGCTGC KsgA
3′-CTTGATCACCTAGGGGGCCCCGACG
Tg/C# 5′-CGGCGCGCXCGGGCGGC KsgA
3′-GCCGCCCGCGCGCGCCG
Tg/A# 5′-GCCGCCCGXGCGCGCCG Nth, Nei
3′-CGGCGGGCACGCGCGGC
8-oxoG/A 5′-GAACTAGTG8ATCCCCCGGGCTGC MutY
3′-CTTGATCACATAGGGGGCCCGACG

F, X, H, 8 and 2 represent 5-foU, Tg, 5-hmU, 8-oxoG and 2-ohA, respectively.