Table 1.
Parameter | tvMyb135–141 | DNA-bound conformation | tvMyb135–141/DNA complex |
---|---|---|---|
NMR restraints used | |||
Intraresidue (i – j = 0) | 289 | 196 | |
Sequential (i – j = 1) | 551 | 403 | |
Medium range (1 < i – j < 5) | 4500 | 405 | |
Long range (i – j ≥ 5) | 104 | 83 | |
Total NOE restraints | 1394 | 1087 | |
Total AIRs | 20 | ||
Hydrogen bonds | 28 × 2 | 28 × 2 | |
Dihedral angles | 144 | 120 | |
1DHN RDCs | 74 | 74 | |
Energy statistics | |||
Etotal | 335.1 ± 11.5 | 221.1 ± 9.5 | −4462.1 ± 116.5 |
Ebond | 29.3 ± 1.6 | 10.9 ± 0.9 | 30.1 ± 3.2 |
Eangle | 114.6 ± 3.4 | 74.6 ± 2.2 | 81.3 ± 39.1 |
Eimproper | 16.4 ± 0.5 | 20.8 ± 1.2 | 67.4 ± 21.9 |
Evdw | 100.9 ± 2.8 | 73.2 ± 3.1 | −629.9 ± 38.3 |
ENOE | 70.6 ± 2.1 | 38.2 ± 1.8 | |
Edihe | 3.4 ± 0.3 | 3.9 ± 0.4 | |
Esani | 10.1 ± 1.4 | ||
Eelectr | −4862.4 ± 63.2 | ||
RDC Q-factora | 0.67 ± 0.04 | 0.029 ± 0.003 | 0.102 ± 0.007 |
Deviation from ideal geometry (RMSD) | |||
Bond (Å) | 0.0041 ± 0.0001 | 0.0025 ± 0.0001 | 0.0032 ± 0.0002 |
Angle (°) | 0.48 ± 0.01 | 0.38 ± 0.007 | 0.67 ± 0.03 |
Mean global RMSD of helical residues (Å) | |||
Backbone atoms | 0.70 ± 0.15 | 0.96 ± 0.25 | 0.43 ± 0.09 0.68 ± 0.25b |
Heavy atoms | 1.56 ± 0.14 | 1.89 ± 0.22 | 0.88 ± 0.16 |
Ramachandran plot | |||
Most favored (%) | 78.9 | 80.9 | 77.0 |
Allowed (%) | 18.4 | 17.6 | 17.5 |
Generously allowed (%) | 2.5 | 1.5 | 4.4 |
Disallowed (%) | 0.2 | 0.0 | 1.1 |
aQ-factor = RMS(Dcalc – Dobs)/RMS(Dobs), where Dcalc and Dobs are calculated and observed RDC values, respectively.
bFor backbone atoms of all helical residues and all phosphate backbone atoms of DNA.