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. 2009 Feb 26;37(7):2381–2394. doi: 10.1093/nar/gkp097

Table 1.

Structural statistics of tvMyb135–141 and tvMyb135–141/DNA complex

Parameter tvMyb135–141 DNA-bound conformation tvMyb135–141/DNA complex
NMR restraints used
    Intraresidue (ij = 0) 289 196
    Sequential (ij = 1) 551 403
    Medium range (1 < ij < 5) 4500 405
    Long range (ij ≥ 5) 104 83
    Total NOE restraints 1394 1087
    Total AIRs 20
    Hydrogen bonds 28 × 2 28 × 2
    Dihedral angles 144 120
    1DHN RDCs 74 74
Energy statistics
    Etotal 335.1 ± 11.5 221.1 ± 9.5 −4462.1 ± 116.5
    Ebond 29.3 ± 1.6 10.9 ± 0.9 30.1 ± 3.2
    Eangle 114.6 ± 3.4 74.6 ± 2.2 81.3 ± 39.1
    Eimproper 16.4 ± 0.5 20.8 ± 1.2 67.4 ± 21.9
    Evdw 100.9 ± 2.8 73.2 ± 3.1 −629.9 ± 38.3
    ENOE 70.6 ± 2.1 38.2 ± 1.8
    Edihe 3.4 ± 0.3 3.9 ± 0.4
    Esani 10.1 ± 1.4
    Eelectr −4862.4 ± 63.2
    RDC Q-factora 0.67 ± 0.04 0.029 ± 0.003 0.102 ± 0.007
Deviation from ideal geometry (RMSD)
    Bond (Å) 0.0041 ± 0.0001 0.0025 ± 0.0001 0.0032 ± 0.0002
    Angle (°) 0.48 ± 0.01 0.38 ± 0.007 0.67 ± 0.03
Mean global RMSD of helical residues (Å)
    Backbone atoms 0.70 ± 0.15 0.96 ± 0.25 0.43 ± 0.09 0.68 ± 0.25b
    Heavy atoms 1.56 ± 0.14 1.89 ± 0.22 0.88 ± 0.16
Ramachandran plot
    Most favored (%) 78.9 80.9 77.0
    Allowed (%) 18.4 17.6 17.5
    Generously allowed (%) 2.5 1.5 4.4
    Disallowed (%) 0.2 0.0 1.1

aQ-factor = RMS(DcalcDobs)/RMS(Dobs), where Dcalc and Dobs are calculated and observed RDC values, respectively.

bFor backbone atoms of all helical residues and all phosphate backbone atoms of DNA.