Table 1.
Electrostatic calculations for Na+- and K+-binding sites in EAAT3. (Sites 1–4 refer to potential cation-binding sites within 10 Å of the amino acid-binding site for the EAAT3 homology models and the GltPh X-ray crystal structures. The EAAT3 and GltPh models used for the valence calculations are in either the HP2-loop open or HP2-loop closed conformations and either the substrate-bound (glutamate or aspartate) or apo form.)
site 1 | site 2 | site 3 | site 4 | |
---|---|---|---|---|
EAAT3 | ||||
sodium | ||||
EAAT3wt|open|apo | 0.80 | <0.3 | 0.72 | 0.84 |
EAAT3wt|open|l-glu | 0.80 | <0.3 | 0.72 | <0.3 |
EAAT3wt|closed|apo | 1.04 | 0.93 | 0.62 | 0.97 |
EAAT3wt|occluded|l-glu | 1.04 | 0.93 | 0.91 | <0.3 |
thallium | ||||
EAAT3wt|open|apo | 0.91 | <0.3 | <0.3 | 0.56 |
EAAT3wt|closed|apo | 0.80 | 0.84 | <0.3 | 0.94 |
EAAT3wt|occluded|l-glu | 0.78 | 0.79 | <0.3 | <0.3 |
potassium | ||||
EAAT3wt|open|apo | 1.16 | <0.3 | <0.3 | 1.11 |
EAAT3wt|open|l-glu | 1.16 | <0.3 | <0.3 | <0.3 |
EAAT3wt|closed|apo | 1.13 | 1.21 | 0.87 | 1.44 |
EAAT3wt|occluded|l-glu | 1.13 | 1.21 | <0.3 | <0.3 |
caesium | ||||
EAAT3wt|open|apo | 1.03 | <0.3 | <0.3 | 0.90 |
EAAT3wt|closed|apo | 0.71 | 0.83 | <0.3 | 1.07 |
EAAT3wt|occluded|l-glu | 0.71 | 0.83 | <0.3 | <0.3 |
GltPh | ||||
sodium | ||||
GltPh|open|apo | 1.27 | 0.56 | 0.91 | 0.81 |
GltPh|open|l-asp | 1.27 | 0.56 | 0.91 | <0.3 |
GltPh|occluded|l-asp | 1.05 | 1.05 | 0.61 | <0.3 |
thallium | ||||
GltPh|open|TBOA | 1.09 | 0.46 | <0.3 | <0.3 |
GltPh|occluded|l-asp | 1.07 | 1.08 | <0.3 | <0.3 |