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. Author manuscript; available in PMC: 2010 Apr 1.
Published in final edited form as: Electrophoresis. 2009 Apr;30(7):1119–1131. doi: 10.1002/elps.200800505

Table1.

Top10 Expression molecules and top10 differentially expression molecules. The expression values for top10 expression proteins in MDAH-2774 and TOV-112D are normalized mean spectral counts across different runs and are shown in log2 scale. The expression values for top10 differentially expressed proteins are normalized spectral count ratio in log2 scale. Qv-value indicates the significance of difference from multiple test correction.

Protein
Accession
Number
Gene
Name
Exp.Value
(log)
qv-value Description
Top10
Expression
Molecules in
MDAH-2774
P60709 ACTB 8.1 actin, beta
P08670 VIM 8.04 vimentin
P38646 HSPA9 7.86 heat shock 70kDaprotein9 (mortalin)
P68032 ACTC1 7.84 actin,alpha, cardiac muscle1
P11142 HSPA8 7.75 heat shock 70kDa protein8
P62736 ACTA2 7.74 actin, alpha2, smooth muscle,
P10809 HSPD1 7.67 heat shock 60KDa protein1 (chaperonin)
P043350 TUBB4 7.44 tublin, beta4
P11021 HSPA5 7.43 heat shock 70KDa protein5 (glucose-regulated
protein,78kD)
P68104 EEF1A1 7.39 eukaryotic translation
elongation factor 1 alpha 1)

Top10
Expression
Molecules in
TOV-112D
P08670 VIM 10.67 vimentin
P07737 PFN1 8.52 profilin1
P15531 NME1 8.3 non-metastatic cells 1
P60709 ACTB 8.2 actin, beta
P22392 NME2 8.15 non-metastatic cells 2
P11142 HSPA8 8.03 heat shock 70kDa protein8
P68104 EEF1A1 7.9 eukaryotic translation
elongation factor 1 alpha 1)
P04083 ANXA1 7.81 annexin A1
P02461 COL3A1 7.78 collagen, type3, alpha1
P61978 HNRPK 7.65 heterogeneous nulear ribonucleoproteinK

Top10
Differentially
Expressed
Molecules
between
MDAH-2774
and TOV-112D
P02461 COL3A1 −7.78 0 collagen, type3, alpha1
P04350 TUBB4 7.44 0 tublin, beta4
P09936 UCHL1 −6.77 0 ubiquitin carboxyl-terminal
esterase L1
P31947 SFN 6.56 0 stratifin
P20671 HIST1H2
AD
6.15 0□26 histone cluster1, H2ad
Q05639 EEF1A2 −5.38 0□26 Eukaryotic translation elongation
factor 1 alpha 2)
P29966 MARCKS −5.24 0□01 myristoylated alanine-rich protein
kinase C substrate
P31949 S100A11 5.19 0 S100 calcium binding protein A11
P37840 SNCA −4.94 0□26 synuclein, alpha
Q9BQE3 TUBA1C 4.55 0 tublin,alpha 1c