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. 2009 Mar 18;9:15. doi: 10.1186/1472-6807-9-15

Table 1.

Number of nodes and edges of the CG constructed with classical and new building rules

pattern peptide # CG nodes # CG edges
P1 G1 13/12 22/19
P2 G1 16/16 43/29
P3 G1 35/30 210/100
P3 G2 25/15 100/0
P4 G2 10/8 14/9
Ala-1(a) Ala(b) 73/73 1918/286
(X)19(c) Ala(b) 380/346 53010/3948

Patterns P1–P4 and peptides G1–G2 refer to Figure 1. In all examples, k is equal to the pattern size. In columns 3 and 4, data shown in regular and bold font concern respectively the classical and modified CG building rules.

(a) linear pattern of size 19 corresponding to alamethicin F50 without the last monomer

(b) alamethicin F50 [NORINE:NOR00007]

(c) linear pattern of 19 'X' monomers