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The Maximum Compatible Subtrees obtained by deleting leaves 4, 18, 12, 21 from the MSY1 haplogroups tree (left) and the SNP tree (right). When these deletions are applied to the two trees, the remaining subtrees contain the same leaves, but are not identical due to the polytomies in the SNP tree. This shows the similarity of the haplogroups tree of Figure 5 (in the article).
