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. 2009 May;182(1):265–275. doi: 10.1534/genetics.108.099853

TABLE 7.

Linkage disequilibrium variance components within and among patients for R5 sequences sampled in a single year

Sites Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
2, 11 0.00000 0.38123 0.31723 0.06400 0.38123
2, 29 0.00113 0.34031 0.27653 0.06400 0.34053
10, 13 0.00000 0.52894 0.37342 0.15553 0.52894
10, 14 0.00000 0.63533 0.44092 0.19441 0.63533
10, 20 0.00000 0.63533 0.44092 0.19441 0.63533
10, 25 0.00000 0.56790 0.39873 0.16917 0.56790
11, 29 0.00000 0.55926 0.40051 0.15875 0.55926
13, 14 0.00000 0.52894 0.37342 0.15553 0.52894
13, 20 0.00000 0.52894 0.37342 0.15553 0.52894
13, 25 0.00000 0.44859 0.31658 0.13201 0.44859
14, 20 0.00000 0.63533 0.44092 0.19441 0.63533
14, 25 0.00000 0.56790 0.39873 0.16917 0.56790
20, 25 0.00000 0.56790 0.39873 0.16917 0.56790
22, 25 0.00000 0.62974 0.55596 0.07378 0.62974

Data are from three patients, each with at least 20 sequences sampled (64 sequences in total). Sites shown exhibit statistically significant linkage disequilibrium.