TABLE 2.

Mean absolute difference between true segregation indicators and probabilities of descent of high-density SNP alleles for equally spaced low-density (LD) SNPs, depending on the spacing of LD-SNPs, the generation after training, and the number of simulated QTL (25 replicates)

No. of simulated QTL	LD-SNP spacing (cM)	Generation
				2	3	4
100	10	0.146	0.151	0.153
500	10	0.146	0.152	0.157
1000	10	0.145	0.152	0.156
500	20	0.249	0.265	0.272

SE < 0.002.