APPENDIX B.

Commercial and non-commercial microarray platforms and software sources used to conduct microarray gene expression studies

Platform vendor	Websites for information on products
Affymetrix	www.affymetrix.com/index.affx
Exon Hit	www.exonhit.com/index.php?page=1
Agilent	www.chem.agilent.com494 www.chem.agilent.com/Scripts/PCol.asp?lPage=494
Illumina	www.illumina.com/
Applied Microarray (formerly Codelink GE Amersham)	www.appliedmicroarrays.com/Human.html
Roche Nimblegen	www.nimblegen.com/products/exp/index.html
Software analysis vendor
Partek Genomic Solutions	www.partek.com
Agilent GeneSpring	www.chem.agilent.com/Scripts/PDS.asp?lPage=27881
dCHIP	biosun1.harvard.edu/complab/dchip/
RMA	www.bioconductor.org/
MAS 5 Affymetrix	www.affymetrix.com/index.affx
Bioconductor	www.bioconductor.org/
Bioinformatics vendor
Ingenuity	www.ingenuity.com
Transfac	www.gene-regulation.com/pub/databases.html
DAVID/EASE	david.abcc.ncifcrf.gov/
Gene Expression Omnibus	www.ncbi.nlm.nih.gov/geo/
KEGG	www.genome.jp/kegg/
GenMAPP	www.genmapp.org/
Novartis SymAtlas	symatlas.gnf.org/SymAtlas/
Microarray World	www.microarrayworld.com/SoftwarePage.html (listing of software, platform, and other tools)