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. Author manuscript; available in PMC: 2009 Nov 5.
Published in final edited form as: J Am Chem Soc. 2008 Oct 11;130(44):14872–14882. doi: 10.1021/ja803833h

Table 1.

Family A polymerase-mediated incorporation (kcat/KM, M-1min-1) of dXTP opposite unnatural nucleotides in the template.a

5′—dTAATACGACTCACTATAGGGAGA
3′—dATTATGCTGAGTGATATCCCTCT(Y)GCTAGGTTACGGCAGGATCGC
X Y Kfb T7 Taq
dA dT (3.2 ± 0.6) × 108 (1.5 ± 0.4) × 107 (4.0 ± 0.5) × 107
dG dT (5.7 ± 0.5) × 104 (9.8 ± 0.7) × 102 (2.5 ± 0.5) × 104
dPICS dPICS (2.4 ± 0.3) × 105 <1.0 × 103 (2.6 ± 0.5) × 104
dA dPICS (1.8 ± 0.4) × 103 <1.0 × 103 <1.0 × 103
dC dPICS (1.8 ± 0.5) × 103 <1.0 × 103 <1.0 × 103
dG dPICS (1.7 ± 0.4) × 103 <1.0 × 103 <1.0 × 103
dT dPICS (1.2 ± 0.2) × 104 <1.0 × 103 (1.2 ± 0.3) × 103
d7AI d7AI (2.2 ± 0.5) × 105 (2.2 ± 0.3) × 103 (1.2 ± 0.1) × 104
dA d7AI (5.9 ± 1.0) × 103 (1.2 ± 0.5) × 103 (4.1 ± 0.1) × 103
dC d7AI (5.5 ± 0.9) × 103 (1.1 ± 0.4) × 103 <1.0 × 103
dG d7AI (1.6 ± 0.4) × 103 <1.0 × 103 <1.0 × 103
dT d7AI (1.6 ± 0.6) × 103 <1.0 × 103 (2.3 ± 0.6) × 103
d3FB d3FB (2.1 ± 0.8) × 106 (5.3 ± 1.6) × 104 (1.5 ± 0.1) × 104
dA d3FB (5.4 ± 1.0) × 105 (1.1 ± 0.1) × 105 (9.1 ± 2.0) × 104
dC d3FB (2.1 ± 1.2) × 103 (1.8 ± 0.2) × 103 (2.1 ± 2.9) × 103
dG d3FB (1.8 ± 0.6) × 103 <1.0 × 103 <1.0 × 103
dT d3FB (9.5 ± 1.1) × 104 (8.1 ± 0.3) × 104 (2.8 ± 0.7) × 104
dMMO2 d5SICS (3.6 ± 0.7) × 105 (3.7 ± 0.1) × 104 (8.6 ± 0.9) × 104
d5SICS d5SICS (2.7 ± 0.9) × 104 <1.0 × 103 (3.2 ± 0.7) × 103
dA d5SICS (2.2 ± 0.3) × 104 (1.7 ± 0.2) × 103 (2.7 ± 0.7) × 103
dC d5SICS <1.0 × 103 <1.0 × 103 <1.0 × 103
dG d5SICS (1.3 ± 0.8) × 105 <1.0 × 103 (3.7 ± 0.5) × 104
dT d5SICS (1.3 ± 0.4) × 104 <1.0 × 103 (3.7 ± 0.9) × 103
d5SICS dMMO2 (4.7 ± 0.4) × 107 (1.1 ± 0.2) × 106 (3.5 ± 0.6) × 106
dMMO2 dMMO2 (1.2 ± 0.1) × 105 (1.5 ± 0.3) × 104 (2.1 ± 0.6) × 104
dA dMMO2 (1.0 ± 0.1) × 105 (5.8 ± 1.7) × 104 (1.1 ± 0.3) × 105
dC dMMO2 <1.0 × 103 <1.0 × 103 <1.0 × 103
dG dMMO2 <1.0 × 103 <1.0 × 103 <1.0 × 103
dT dMMO2 <1.0 × 103 (1.9 ± 0.1) × 103 (8.2 ± 0.8) × 103
a

See text and Supporting Information for experimental details.

b

Ref. 11-14. Error reported is standard deviation calculated from three independent experiments.