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. Author manuscript; available in PMC: 2009 Nov 5.
Published in final edited form as: J Am Chem Soc. 2008 Oct 11;130(44):14872–14882. doi: 10.1021/ja803833h

Table 2.

Family A polymerase-mediated extension (kcat/KM, M-1min-1) of dX:dY pairs.a

5′—dTAATACGACTCACTATAGGGAGA(X)
3′—dATTATGCTGAGTGATATCCCTCT(Y)GCTAGGTTACGGCAGGATCGC
X Y Kfb T7 Taq
dA dT (1.7 ± 0.2) × 108 (1.3 ± 0.3) × 107 (1.9 ± 0.2) × 107
dG dT (4.8 ± 0.5) × 105 (1.8 ± 0.1) × 104 (7.4 ± 1.2) × 103
dPICS dPICS <1.0 × 103 (2.8 ± 0.4) × 103 <1.0 × 103
dA dPICS nd <1.0 × 103 nd
dT dPICS (2.0 ± 1.1) × 105 nd (1.6 ± 0.1) × 103
d7AI d7AI <1.0 × 103 <1.0 × 103 <1.0 × 103
dA d7AI (1.9 ± 0.2) × 103 <1.0 × 103 <1.0 × 103
dC d7AI (4.5 ± 0.7) × 103 <1.0 × 103 nd
d3FB d3FB (3.3 ± 0.6) × 105 (1.5 ± 0.4) × 105 (1.6 ± 0.4) × 104
dA d3FB (6.3 ± 1.7) × 104 <1.0 × 103 <1.0 × 103
dC d3FB (1.4 ± 0.5) × 104 nd nd
dG d3FB <1.0 × 103 nd nd
dT d3FB (1.9 ± 0.4) × 105 (3.4 ± 0.1) × 103 (1.1 ± 0.2) × 103
dMMO2 d5SICS (1.9 ± 0.2) × 106 (5.4 ± 1.2) × 105 (2.2 ± 0.2) × 104
d5SICS d5SICS <1.0 × 103 <1.0 × 103 <1.0 × 103
dA d5SICS nd <1.0 × 103 <1.0 × 103
dG d5SICS (4.9 ± 0.5) × 103 <1.0 × 103 <1.0 × 103
dT d5SICS (4.0 ± 0.2) × 105 nd (4.7 ± 0.7) × 103
d5SICS dMMO2 (6.7 ± 1.1) × 105 (1.1 ± 0.2) × 106 (6.4 ± 1.6) × 104
dMMO2 dMMO2 (5.3 ± 0.9) × 103 (5.9 ± 0.4) × 103 <1.0 × 103
dA dMMO2 (4.6 ± 0.2) × 104 <1.0 × 103 (1.7 ± 0.1) × 103
dT dMMO2 nd nd (1.1 ± 0.1) × 104
a

See text and Supporting Information for experimental details.

b

Ref. 11-14. Error reported is standard deviation calculated from three independent experiments. nd, not determined.