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. Author manuscript; available in PMC: 2009 Nov 5.
Published in final edited form as: J Am Chem Soc. 2008 Oct 11;130(44):14872–14882. doi: 10.1021/ja803833h

Table 5.

Family B and family X polymerase-mediated extension (kcat/KM, M-1min-1) of dX:dY pairs.a

5′—dTAATACGACTCACTATAGGGAGA(X)
3′—dATTATGCTGAGTGATATCCCTCT(Y)GCTAGGTTACGGCAGGATCGC
X Y Vent Therminator Pol β
dA dT (2.9 ± 0.6) × 106 (3.4 ± 1.1) × 106 (2.1 ± 0.2) × 105
dG dT (1.5 ± 0.1) × 104 (7.1 ± 1.6) × 105 (2.8 ± 0.4) × 103
dPICS dPICS <1.0 × 103 (1.1 ± 0.2) × 104 (9.7 ± 1.0) × 103
dA dPICS <1.0 × 103 (1.4 ± 0.1) × 104 <1.0 × 103
dG dPICS <1.0 × 103 nd nd
dT dPICS (1.1 ± 0.1) × 103 nd (1.3 ± 0.1) × 103
d7AI d7AI <1.0 × 103 (1.2 ± 0.1) × 105 (4.4 ± 0.5) × 104
dA d7AI <1.0 × 103 (8.7 ± 1.7) × 103 (7.6 ± 0.3) × 103
dT d7AI (1.0 ± 0.1) × 103 (2.8 ± 0.4) × 104 nd
d3FB d3FB (5.7 ± 0.2) × 103 (7.8 ± 0.8) × 105 (8.3 ± 0.5) × 104
dA d3FB (1.1 ± 0.4) × 103 (3.0 ± 0.4) × 103 (6.7 ± 0.2) × 103
dT d3FB <1.0 × 103 nd nd
dMMO2 d5SICS (6.2 ± 1.6) × 103 (4.6 ± 0.3) × 105 (4.4 ± 0.5) × 104
d5SICS d5SICS <1.0 × 103 (4.5 ± 1.1) × 103 (2.2 ± 1.0) × 104
dA d5SICS <1.0 × 103 (8.8 ± 1.5) × 104 (3.9 ± 0.3) × 103
dC d5SICS nd nd (5.3 ± 0.2) × 103
dG d5SICS <1.0 × 103 (1.5 ± 0.2) × 105 (4.1 ± 0.1) × 103
dT d5SICS <1.0 × 103 (2.3 ± 0.5) × 105 (4.4 ± 0.1) × 103
d5SICS dMMO2 (7.9 ± 0.4) × 103 (2.5 ± 0.6) × 105 (4.0 ± 2.1) × 105
dMMO2 dMMO2 (1.2 ± 0.1) × 103 (6.8 ± 2.0) × 104 (1.2 ± 0.4) × 104
dA dMMO2 nd (1.5 ± 0.1) × 103 (2.2 ± 0.1) × 104
dC dMMO2 nd (3.5 ± 0.2) × 104 (2.1 ± 0.3) × 104
dG dMMO2 nd (1.2 ± 0.1) × 103 nd
dT dMMO2 (3.8 ± 0.8) × 103 (4.4 ± 1.9) × 104 nd
a

See text and Supporting Information for experimental details. Error reported is standard deviation calculated from three independent experiments. nd, not determined.