Table IV.
Main characteristics of genes and primer sequences used in this work
id, Identity; hom, homology; aa, amino acid; NCBI, National Center for Biotechnology Information.
| Name of Sunflower Gene | Putative Function | GenBank of CGP EST Accession No. | Amplification Product Size | Primer Sequences | Identity Percentage of EST Sequences with Other Plants (Plant, Accession No.) | Presence of Conserved Domain (Search against NCBI Conserved Domain Database) |
|---|---|---|---|---|---|---|
| HaNADPHox | NADPHox | >QH_CA_Contig929 | 116 | Forward: AGGGTCGTTTGACTGGTTC | 79% id bp (Nicotiana benthamiana, AB079499) | Oxidoreductase FAD-binding domain |
| Reverse: ACCGAGCATCACCTTCTTC | ||||||
| HaPOX | Peroxidase l | >QH_CA_Contig2935 | 101 | Forward: CCTCCGTTATTCGCCTTC | 71% hom aa (Arabidopsis, NP_172906) | Plant peroxidase superfamily domain |
| Reverse: ATTGGCTGCTGACTCCTTC | ||||||
| HaAO1 | Amine oxidase | >QHL17I14.yg.ab1 | 108 | Forward: CGACTGTATCATCATCGAGTT | 80% id aa (Solanum lycopersicum, CAI39243) | Cu-amine-oxide superfamily domain: copper amine oxidase, catalytic domain |
| Reverse: GCGTTACAAACTGGCAAATC | ||||||
| HaAO2 | Amine oxidase | >QH_CA_Contig3110 | 181 | Forward: CGTCCTTTGGTATGTGTTTG | 79% id bp (Glycine max,AF089851) | No putative domain |
| Reverse: GGTTTCTTTATGCTCGGTGT | ||||||
| HaSer/ThrK | Ser/Thr protein kinase | >QHB16I20.yg.ab1 | 195 | Forward: CAAGGGAGGTGACTTTGG | 86% id aa (Arabidopsis, BAF01492) | S_tkc superfamily domain: Ser/Thr protein kinases, catalytic domain |
| Reverse: ATGTTGGCATACGGCTCT | ||||||
| HaMAPK6 | Mitogen-activated protein kinase | >QH_CA_Contig1463 | 182 | Forward: CAAGCAACCCTCTACTGAAC | 87% id aa (Solanum tuberosum,BAB93530) | S_tkc superfamily domain |
| Reverse: GCAACCCACAGACCATAC | ||||||
| HaCaM | Calmodulin | >QH_CA_Contig1037 | 168 | Forward: GAGTTCCTTGGTGGTGATG | 94% id aa (Arabidopsis, NP_850860) | EF-hand, calcium binding motif |
| Reverse: GACCTGTGTTGTCGTTTCAG | ||||||
| HaPTP | Protein Tyr phosphatase | >QH_CA_Contig640 | 107 | Forward: TTTCAAGTGGAGGTTGTGGT | 59% hom aa (Arabidopsis, CAB62119) | No putative domain |
| Reverse: GAGGGAGGATTTGGTGTTG | ||||||
| Haβ-tubulin | β-Tubulin | QH_CA_Contig4019 | 132 | Forward: GGCGTCTACCTTCATTGGT | 95% hom aa (Arabidopsis, NP_568960) | β-Tubulin domain |
| Reverse: TCCATCTCATCCATTCCTTC |