Table 4.

The statistics of the breakpoint graph of the ancestral rodent (mouse–rat ancestor), ancestral primate (macaque–human–chimpanzee ancestor), carnivore (dog), and opossum genomes

The ancestral rodent and primate ancestors were reconstructed using MGRA and were used as the genomes in the leaves of the phylogenetic tree for four species: rodent, primate, dog, and opossum. The statistics are shown for before running MGRA, after MGRA Stage 1, and after MGRA Stage 2 run on the leaf branches (i.e., without assuming any particular topology of the phylogenetic tree). The T-consistent multi-colors are shown in bold. Compare to Table 1B and Supplemental Table S13.