Table 2.
Gimap family thymus cDNA sequencing in DR.+/+ and DR.lyp/lyp rats.
| Gene name | Location (bp) | RefSeq identifier | mRNA position | DR.+/+ | DR.lyp/lyp | F344 | A.A Change | Genbank accession # |
|---|---|---|---|---|---|---|---|---|
| Gimap8 | 76738163 | NM_001033923 | −96 | C | T | 5′ UTR | DQ125335-36 | |
| −11 | T | C | 5′ UTR | |||||
| Gimap9 | 76765555 | NM_001008398 | 928 | C | T | 3′ UTR | DQ125337-38 | |
| D4Rhw2 | 76.77 | |||||||
| Gimap4 | 76777679 | NM_173153 | 216 | A | G | A | G 72 G (Synonymous change) | DQ125339-40 |
| 510 | G | A | G | T 170 T (Synonymous change) | ||||
| 618 | G | A | G | L 206 L (Synonymous change) | ||||
| 922-923 | TA | — | — | YLN* | ||||
| 308 | ||||||||
| LELIIKAWEIASFIFNQFMRD* | ||||||||
| Gimap6 | 76794903 | NM_001011968 | No SNPs | DQ125342-43 | ||||
| Gimap7 | 76812445 | NM_001024328 | 603 | G | A | V 201 V (Synonymous change) | DQ125348-49 | |
| D4Rhw6 | 76.82 | |||||||
| Gimap1 | 76829536 | NM_001034849 | 752 | T | C | M 251 T | DQ125350-51 | |
| Gimap5 | 76836521 | NM_145680 | 252 | C | — | IFESKIQNQDMDKDIGNCY… | DQ125352-53 | |
| 85 | ||||||||
| SSSQRSRTKTWTRTLGTAT* | ||||||||
| 523 | C | T | L 175 - | |||||
| IIsnp3 | 77.16 |
mRNA position is relative to the ATG start site. UTR is untranslated region.