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. 2009 Mar 2;37(8):2434–2448. doi: 10.1093/nar/gkp029

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© 2009 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — Comparison of centroid structures. Structural alignment of the centroid structures using only the atoms from the DNA part of the molecule from the simulations of CP-DNA in AGGC and TGGA sequence contexts (A), OX-DNA in AGGC and TGGA sequence context (B) and CP- and OX-DNA in TGGA sequence context (C). The structural alignment of the central four base-pairs of the centroid structures of CP-DNA in AGGC and TGGA sequence contexts (D), OX-DNA in AGGC and TGGA sequence context (E) and CP- and OX-DNA in TGGA sequence context (F).