Table 1.

The 20 highest scoring amino acid patterns.

Exact pattern discovery			Chemical equivalency set			Structural equivalency set
Pattern	Score	Significance	Pattern	Score	Significance	Pattern	Score	Significance
FE.P...F	1	-15.53	[ST]P.NPTG	1	-24.47	[DLN]. [DLN]... [KMR]. [ITV] [CS]	1	-15.21
SP.NP.G	0.99	-19.82	[ST]PNNP.G	1	-25.08	[CS]..NPTG	1	-19.71
V...EP...H	0.99	-15.40	[ILMV]..P.NP.G	1	-18.46	SP.NP.G	0.99	-19.82
GPY.G	0.99	-14.93	[ST]PN..T [AG]	1	-18.51	[CS]... [FHWY]. [FHWY].N	0.99	-12.60
G...GPY	0.98	-15.08	[ST]P.NP.G	0.99	-18.81	[EQ].P [FHWY] [ITV].V	0.99	-17.76
P.NPTG	0.98	-19.68	[ILMV] [KR]EP [FY]	0.99	-17.54	[FHWY]P.E [FHWY]I	0.99	-19.11
PNNP.G	0.98	-20.06	SP.NP.G	0.99	-19.82	[ITV]..P.NP.G	0.99	-18.80
PY..SG	0.98	-14.71	[ILMV] [KR]EPF	0.99	-17.91	GPY.G	0.99	-14.93
NNPT	0.97	-14.60	[ILMV].... [QN]P.G	0.99	-12.62	[CS].PNNP	0.99	-19.63
V.....N..T	0.97	-8.11	[QN]..FV [FY]	0.99	-13.97	V...EP...H	0.99	-15.40
P..YP.K	0.97	-15.59	E.GP [FY]	0.99	-14.82	[ITV].SP. [DLN]P	0.99	-17.67
N...P.PE	0.97	-14.86	GPY.G	0.99	-14.93	PY.. [CS]G	0.98	-14.52
GPY...G	0.97	-15.25	PNNP [ST]	0.99	-19.40	P.NPTG	0.98	-19.68
SP.N..G	0.97	-14.40	[ILMV]. [ST].N...G	0.99	-12.25	G...GPY	0.98	-15.08
S..NP.G	0.96	-14.26	GY.. [ILMV].K	0.99	-13.20	PNNP.G	0.98	-20.06
T...NP.G	0.96	-14.38	C [ST]..NP	0.99	-14.33	[ITV] [FHWY]E...F	0.98	-13.02
PYG.S	0.96	-15.07	V...EP...H	0.99	-15.40	PY..SG	0.98	-14.71
QL.......Y	0.96	-9.12	[QN] [ST]P.N. [ST]	0.99	-17.92	S..P.D [KMR] [DLN]	0.98	-18.12
R...Y.P	0.96	-9.35	[ILMV]... [ST]P.N.T	0.99	-17.30	K.P [FHWY]T.. [ITV]	0.98	-18.59
N.K..F	0.96	-9.03	P [FY]PE. [AG]	0.99	-19.53	[KMR]..GP [FHWY].. [ITV]	0.98	-18.21