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The PDLD/S −LRA effective free-energy surface (in kilocalories per mole) for the translocation process in LTag. This surface include the adjustment that reflects the internal energy of the LTag states (see the text in this section). The indexes T1 and T2 designate the same T state but with translated DNA. R″ represents DNA coordinates (see text for details) and Q″ (Q″ = Q/λQ, λQ = (ℏ/2)ωQδQ2) represents the protein structural changes.
