Table 1.

Gene ontology functional terms and their respective significances under the standard (unweighted) and the weighted tests obtained for the HPV experiment [19] with the permutation test.

			Weighted			Unweighted
GO name	BP	size	Log Odds	p-value	Adjusted p-value	Log Odds	p-value	Adjusted p-value
negative regulation of protein kinase activity	GO:0006469	100	3.030	<0.001	<0.001	2.548	0.006	0.083
DNA replication initiation	GO:0006270	44	4.281	<0.001	<0.001	4.162	<0.001	<0.001
SRP-dependent cotranslational protein targeting to membrane	GO:0006614	12	4.103	<0.001	<0.001	4.032	<0.001	<0.001
DNA strand elongation	GO:0006271	13	4.079	<0.001	<0.001	3.945	<0.001	<0.001
regulation of smooth muscle contraction	GO:0006940	18	2.875	0.010	0.088	3.597	<0.001	<0.001