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. 2009 May 29;5(5):e1000458. doi: 10.1371/journal.ppat.1000458

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James et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Genotypes for each locus are purple for heterozygous genotypes, red for the higher frequency homozygous genotype, blue for the minority homozygous genotype, and white for missing data. Locus names are shown above the genotypes and are ordered into linkage groups of descending supercontig size based on comparison to genome supercontigs (number shown above the locus names) from the assembly of strain JEL423 (http://www.broad.mit.edu/annotation/genome/batrachochytrium_dendrobatidis). For precise genomic locations, see Table 3. (A) Pattern of LOH showing closely related strains from Panama (green highlighting) and Australia (red highlighting) differing in genotype at a single locus (8702X2). (B) Prevalent genotype from Panama differing from Panamanian genotype shown in (A) by LOH of all markers on supercontig 1.1. (C) Genotypes of strains from the Sierra Nevada showing both LOH (compare JAM083 and JAM084) and highly recombined genotypes (JAM033 and LRJ089).