Table 1.
Organism a | Sb | Genbank acc. nr | Complete mt genome | mt PCGc | 12S-rRNA | 16S-rRNA | Control Region(s)d | Ref. e | |||||||
Length (bp) | AT% | AT-skewf | GC-skewf | Length (bp) | AT% | Lengh (bp) | AT% | Length (bp) | AT% | Length (bp) | AT% | ||||
D. pteronyssinus | A | EU884425 | 14,203 | 72.60 | -0.199 | 0.194 | 10,826 | 71.61 | 665 | 72.93 | 1078 | 76.07 | 286 | 91.61 | this study |
Am. triguttatum | P | NC_005963 | 14,740 | 78.40 | -0.022 | -0.133 | 10,876 | 78.29 | 693 | 79.65 | 1199 | 81.82 | 307-307 | 71.66-71.01 | unpub. |
As. sp.g | A | NC_010596 | 16,067 | 70.07 | 0.015 | -0.049 | 10,560 | 69.27 | 680 | 72.79 | 1047 | 76.31 | 1207-1236 | 70.01–70.06 | unpub. |
C. capensis | P | NC_005291 | 14,418 | 73.54 | 0.036 | -0.374 | 10,873 | 72.66 | 695 | 76.26 | 1225 | 78.29 | 342 | 71.35 | [38] |
H. flava | P | NC_005292 | 14,686 | 76.91 | -0.018 | -0.116 | 10,817 | 76.65 | 699 | 78.40 | 1196 | 81.61 | 310-310 | 66.45–66.77 | [38] |
I. hexagonus | P | NC_002010 | 14,539 | 72.66 | 0.033 | -0.366 | 10,826 | 71.13 | 705 | 78.44 | 1287 | 72.60 | 359 | 71.87 | [37] |
I. holocyclus | P | NC_005293 | 15,007 | 77.38 | -0.013 | -0.254 | 10,860 | 76.38 | 716 | 77.93 | 1214 | 81.55 | 352–450 | 78.41–80.00 | [26] |
I. persulcatus | P | NC_004370 | 14,539 | 77.34 | -0.024 | -0.269 | 10,879 | 76.59 | 720 | 78.89 | 1206 | 79.77 | 352 | 77.56 | [26] |
I. uriae | P | NC_006078 | 15,053 | 74.79 | 0.007 | -0.328 | 10,837 | 73.75 | 712 | 78.09 | 1210 | 78.35 | 388–476 | 77.06-74.16 | [26] |
Le. akamushi | A | NC_007601 | 13,698 | 67.47 | -0.016 | -0.075 | 10,292 | 67.19 | 596 | 67.11 | 1026 | 72.03 | 260–262 | 60.38-59.54 | [74] |
Le. deliense | A | NC_007600 | 13,731 | 69.95 | -0.017 | -0.058 | 10,292 | 70.06 | 602 | 70.27 | 1023 | 73.02 | 294–301 | 62.24-61.79 | [74] |
Le. pallidumh | A | NC_007177 | 16,779 | 70.96 | -0.031 | -0.044 | 10,312 | 71.38 | 601 | 72.05 | 1008 | 74.90 | 537-724-736-803 | 63.87-66.71-66.75-66.50 | [24] |
M. occidentalisi | P | NC_009093 | 24,961 | 75.97 | 0.095 | -0.291 | 10,014 | 74.38 | 742 | 81.13 | 1192 | 84.31 | 310-311-311-311 | 79.35-79.10-79.42-78.78 | [23] |
O. moubata | P | NC_004357 | 14,398 | 72.26 | 0.067 | -0.379 | 10,890 | 71.35 | 686 | 74.20 | 1212 | 76.90 | 342 | 71.64 | [38] |
O. porcinus | P | NC_005820 | 14,378 | 70.98 | 0.059 | -0.355 | 10,877 | 70.11 | 691 | 74.38 | 1207 | 74.48 | 338 | 69.53 | [27] |
R. sanguineus | P | NC_002074 | 14,710 | 77.96 | -0.034 | -0.098 | 10,803 | 77.96 | 687 | 79.18 | 1190 | 81.34 | 303–305 | 67.33-66.56 | [37] |
S. magnus | A | NC_011574 | 13,818 | 74.59 | -0.020 | -0.037 | 10,560 | 74.44 | 609 | 74.38 | 992 | 74.38 | 1018 | 75.66 | [22] |
T. urticae | A | NC_010526 | 13,103 | 84.27 | 0.026 | -0.016 | 10,226 | 84.00 | 646 | 85.91 | 991 | 85.27 | 44 | 95.45 | [18] |
U. foiliig | A | NC_011036 | 14,738 | 72.95 | 0.201 | -0.279 | 10,679 | 71.83 | 649 | 74.35 | 1016 | 74.35 | 387–644 | 76.49–77.33 | unpub. |
V. destructor | P | NC_004454 | 16,477 | 80.02 | -0.021 | 0.177 | 10,728 | 79.22 | 726 | 80.44 | 1149 | 83.12 | 2174 | 79.71 | [25] |
W. hayashiig | A | NC_010595 | 14,857 | 72.97 | 0.264 | -0.305 | 10,573 | 73.01 | 625 | 75.05 | 1045 | 77.42 | 1403 | 68.28 | unpub. |
Li. polyphemus | j | NC_003057 | 14,985 | 67.60 | 0.111 | -0.399 | 11,077 | 66.43 | 799 | 69.70 | 1296 | 71.00 | 348 | 81.3 | [30,31] |
* values were obtained from the corresponding GenBank flat-file in the NCBI database (status January 10, 2009)
a D = Dermatophagoides, Am = Amblyomma, As = Ascoschoengastia, C = Carios, H = Haemaphysalis, I = Ixodes, Le = Leptotrombidium, M = Metaseiulus, O = Ornithodoros, R = Rhipicephalus, S = Steganacarus, T = Tetranychus, U = Unionicola, V = Varroa, W = Walchia, Li = Limulus
b S = Acari superorder (A = Acariformes, P = Parasitiformes)
c PCG = Protein coding genes
d duplications of the control region were also considered
e Ref = References; unpub = unpublished
f GC- and AT-skew for the strand coding for cox1, calculated following [46]
g for these species the largest non-coding region(s) was/were assumed to be the control region(s)
h L. pallidum has a duplication of 16S-rRNA; in this table the largest 16S-rRNA gene is considered
i only single copy genes were considered for protein coding gene length calculation of M. occidentalis
jL. polyphemus belongs to the order of the Xiphosura within the class of the Merostomata