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. 2009 Mar 23;10:122. doi: 10.1186/1471-2164-10-122

Table 2.

Prediction results for the localization of wild type proteins with the Scandinavian protocol.

Compartmenta tp fp tn fn Accuracy Precision Recall MCC Proteins located
Mtm 10 29 1337 140 0.889 0.256 0.067 0.086 39
Mps 0 6 1363 147 0.899 0.000 0.000 -0.021 6
Mma 91 74 1293 58 0.913 0.552 0.611 0.532 165
Gtm 23 178 1240 75 0.833 0.114 0.235 0.079 201
PM 221 35 619 641 0.554 0.863 0.256 0.268 256
S 246 84 1093 93 0.883 0.745 0.726 0.661 330
ER 2 1 1330 183 0.879 0.667 0.011 0.074 3
N 98 23 1097 298 0.788 0.810 0.247 0.368 121
P 6 24 1462 24 0.968 0.200 0.200 0.184 30
C 269 166 852 229 0.739 0.618 0.540 0.392 435
Summary 966b 620b 1888b 0.835c 0.483c 0.289c 0.262c 1586b

Abbreviations for statistical parameters as in Table 1.

a C, cytosol; Gtm, Golgi, transmembrane; Mma, mitochondrial matrix; Mps, mitochondrial, periplasmic space; Mtm, mitochondrial transmembrane; N, nuclear; P, peroxisomal; PM, plasma membrane; S, secreted

btotal number

caverage value.