Table 9.
Running time for kernel matrix computation (3860 × 3860), [s]
| Method | mismatch(5,1) | mismatch(5,2) | triple(1,3) |
| full seq. | 12,084 | 13,593 | 153 |
| region | 2,624 | 3,195 | 73 |
| region+clustering | 2,412 | 2,998 | 64 |
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