TABLE 1.
Strain | Origin | QN IC50 (nM) | Amino acid encoded by Pfcrt codon:
|
Amino acid encoded by Pfmdr1 codon:
|
Amino acid encoded by Pfmrp codon:
|
Pfnhe-1 microsatellite ms4760b
|
|||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
74 | 75 | 76 | 220 | 271 | 326 | 356 | 371 | 86 | 184 | 1034 | 1042 | 1246 | 191 | 437 | No. of DNNND repeats | No. of DDNHNDNHNN repeats | Mutation | Profile | |||
IMT 9881 | Niger | 57 | M | N | K | A | Q | N | I | R | N | Y | S | N | D | H | S | 3 | 2 | N | 9 |
IMT 10354 | Comoros | 58 | I | E | T | S | Q | N | I | I | Y | F | S | N | Y | H | S | 1 | 3 | N | 12 |
D6 | Sierra Leone | 62 | M | N | K | A | Q | N | I | R | N | Y | S | N | D | H | S | 1 | 2 | N | 3 |
IMT 16332 | Congo | 83 | I | E | T | S | E | N | T | I | Y | Y | S | N | D | H | S | 1 | 2 | N | 3 |
3D7 | Africa | 128 | M | N | K | A | Q | N | I | R | N | Y | S | N | D | H | S | 1 | 2 | K | 2 |
IMT 8425 | Senegal | 148 | M | N | K | A | Q | N | I | R | N | Y | S | N | D | H | S | 1 | 2 | K | 2 |
IMT 16116 | Congo | 204 | I | E | T | S | E | N | I | I | Y | F | S | N | D | H | S | 2 | 2 | N | 18 |
IMT 10500 | Comoros | 210 | M | N | K | A | E | N | I | R | N | Y | S | N | D | H | S | 1 | 2 | K | 2 |
IMT 10336 | Comoros | 271 | M | N | K | A | E | N | I | R | N | Y | S | N | D | H | S | 1 | 2 | N | 3 |
FCR3 | The Gambia | 334 | I | E | T | S | E | S | I | I | Y | Y | S | N | D | Y | A | 2 | 1 | N | 6 |
IMT 31 | Senegal | 371 | M | N | K | A | Q | N | I | R | N | Y | S | N | D | H | S | 1 | 2 | N | 3 |
IMT Vol | Djibouti | 421 | I | E | T | S | E | S | I | I | Y | Y | S | N | D | Y | A | 2 | 1 | N | 6 |
IMT 6311 | Senegal | 453 | I | E | T | S | E | N | T | I | Y | F | S | N | D | H | S | 3 | 1 | N | 7 |
IMT Bres | Brazil | 500 | I | E | T | S | E | S | I | I | Y | Y | S | N | D | Y | A | 2 | 1 | N | 6 |
IMT L1 | Niger | 575 | I | E | T | S | E | N | I | I | Y | Y | S | N | D | Y | A | 2 | 1 | N | 6 |
FCM29 | Cameroon | 580 | I | E | T | S | E | S | I | I | Y | Y | S | N | D | Y | A | 3 | 1 | N | 7 |
IMT K2 | Cambodia | 599 | I | E | T | S | V | S | T | I | N | F | C | D | D | Y | A | 3 | 1 | N | 7 |
IMT A4 | Thailand | 605 | I | E | T | S | E | S | I | I | N | F | C | D | Y | H | S | 3 | 1 | N | 7 |
PA | Uganda | 625 | I | E | T | S | E | S | I | I | Y | Y | S | N | D | Y | A | 2 | 1 | N | 6 |
W2 | Indochina | 686 | I | E | T | S | E | S | T | I | Y | Y | S | N | D | Y | A | 2 | 2 | N | 1 |
IMT K4 | Cambodia | 1,034 | I | E | T | S | E | S | T | I | N | Y | C | D | D | Y | A | 3 | 1 | N | 7 |
IMT 9996 | Comoros | 1,039 | M | N | K | A | Q | N | I | R | N | Y | S | N | D | H | S | 2 | 1 | N | 6 |
IMT K14 | Cambodia | 1,310 | I | E | T | S | E | S | T | I | N | F | C | D | Y | Y | A | 3 | 1 | N | 7 |
Boldface indicates point mutations.
Polymorphism types are detailed in Fig. 1.