TABLE 2.
Pfdhfr genotypes and microsatellite markers from isolates collected in 1999 and 2006 to 2007
Yr of collection (no. of isolates) | No. of samples froma:
|
Pfdhfr genotypeb
|
Microsatellite haplotype at the following locusc:
|
Haplogroup | Frequency | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CC | PC | Iquitos | BR | C50R | N51I | S108N | I164L | −5.30 | −3.87 | −0.3 | 0.52 | 5.87 | |||
1999 (104) | 25 | 28 | Yes | C | I | N | L | 223 | 216 | 101 | 97 | 122 | DHFR-A1 | 0.51 | |
1 | 0 | Yes | C | I | N | L | 223 | 220 | 101 | 97 | 122 | DHFR-A2 | 0.01 | ||
0 | 31 | No | C | N | N | I | 223 | 195 | 125 | 97 | 108 | DHFR-B1 | 0.30 | ||
14 | 5 | No | C | N | N | I | 202 | 209 | 97 | 103 | 108 | DHFR-C1 | 0.18 | ||
2006-2007 (62) | 8 | Yes | C | I | N | L | 223 | 216 | 101 | 97 | 122 | DHFR-A1 | 0.13 | ||
1 | Yes | C | I | N | L | 223 | 216 | 101 | 97 | 120 | DHFR-A3 | 0.016 | |||
1 | Yes | C | I | N | L | 225 | 216 | 101 | 97 | 122 | DHFR-A4 | 0.016 | |||
3 | Yes | R | I | N | I | 202 | 209 | 97 | 99 | 120 | DHFR-D1 | 0.05 | |||
44 | No | C | N | N | I | 223 | 195 | 125 | 97 | 108 | DHFR-B1 | 0.71 | |||
1 | No | C | N | N | I | 223 | 195 | 113 | 97 | 108 | DHFR-B2 | 0.016 | |||
4 | No | C | N | N | I | 202 | 209 | 97 | 103 | 108 | DHFR-C1 | 0.065 |
CC, Caballococha; PC, Padre Cocha.
Mutations are indicated by boldface.
Microsatellite loci are named according to their positions (in kilobases) from the gene; negative positions are 5′ and positive positions are 3′ to the gene.