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. 2009 Mar 6;8(5):756–767. doi: 10.1128/EC.00332-08

TABLE 3.

GO terms of the ontology biological process that are significantly overrepresented by Cdc53p depletion

Cluster GO term description Pa No. of regulated genesb Background frequencyc
I Sulfur metabolic process 1.32E−09 18 48
Nitrogen compound metabolic process 7.41E−09 42 226
Amino acid and derivative metabolic process 7.94E−09 36 178
Organic acid metabolic process 3.54E−08 47 278
II Transport 0.3 54 687
Ion transport 1.09E−05 19 90
Lipid transport 4.56E−04 6 16
Oligopeptide transport 7.94E−04 5 12
Vitamin transport 1.21E−03 3 4
Basic amino acid transport 9.08E−03 3 7
III Response to stimulus 0.31 33 409
Response to temp stimulus 3.52E−04 7 21
Response to oxidative stress 5.90E−04 11 51
IV Respiratory chain complex IV assembly 1.23E−03 4 8
V Ethanol metabolic process 2.09E−03 4 9
VI Cell separation during cytokinesis 3.47E−03 5 16
VII Fermentation 3.47E−03 5 16
VIII Chromatin assembly or disassembly 3.91E−03 10 55
a

That is, the significance of overrepresentation of listed GO terms comparing the transcriptional profiles of strains KTY31 to KTY3 in the presence of doxycycline.

b

That is, the number of differentially regulated genes belonging to the listed GO terms.

c

That is, the number of genes belonging to listed GO terms on a genome-wide level.