Skip to main content
. 2009 Mar 6;8(5):756–767. doi: 10.1128/EC.00332-08

TABLE 5.

Subclassification of the GO term transport of the transcriptional profile of Cdc53p-depleted cells

GO term Pa No. of regulated genesb Background frequencyc Regulation of KTY31 vs KTY3 Gene name (open reading frame no.)
Transport 0.3 54 687
Ion transport 1.09E-05 19 90
    Metal ion transport 1.08E-04 11 57 Up CFL2 (orf19.1264), CTR1 (orf19.3646), FTR1 (orf19.7219), CRP1 (orf19.4784), orf19.2006.1, FET3 (orf19.4211), FET34 (orf19.1206), COX19 (orf19.4967), CFL5 (orf19.1930), FTR2 (orf19.7231), ATX1 (orf19.2369.1)
2 Down orf19.4940, ENA21 (orf19.5170)
    Other 4 Up PHO87 (orf19.2454), SSU1 (orf19.7313), SUL2 (orf19.2738), MEP1 (orf19.1614)
2 Down orf19.2959.1, PHO84 (orf19.1172)
Lipid transport 4.56E-04 1 16 Up orf19.4342
5 Down RTA2 (orf19.24), GIT2 (orf19.1978), RTA3 (orf19.23), GIT1 (orf19.1979), orf19.34
Oligopeptide transport 7.94E-04 5 12 Down OPT4 (orf19.176), PTR2 (orf19.6937), IFC3 (orf19.3749), OPT9 (orf19.2584), OPT1 (orf19.2602)
Vitamin transport 1.21E-03 1 4 Up TNA1 (orf19.4335)
2 Down PHO113 (orf19.2619), PHO112 (orf19.3727)
Basic amino acid transport 9.08E-03 1 7 Up CAN2 (orf19.111)
2 Down ALP1 (orf19.2337), orf19.4940
a

That is, the significance of overrepresentation of the listed GO terms comparing the transcriptional profiles of strains KTY31 to KTY3 in the presence of doxycycline.

b

That is, the number of differentially regulated genes belonging to the listed GO terms.

c

That is, the number of genes belonging to the listed GO terms on a genome-wide level.