Skip to main content
. 2009 Mar 6;8(5):756–767. doi: 10.1128/EC.00332-08

TABLE 6.

Subclassification of the GO term filamentous growth of the transcriptional profile of Cdc53p-depleted cells

GO term Pa No. of regulated genesb Background frequencyc Regulation of KTY31 vs KTY3 Gene name (open reading frame no.)
Filamentous growth 0.82 23 323
Invasive growth (sensu Saccharomyces) 0.08 1 15 Up ALS4 (orf19.4555)
2 Down CDC14 (orf19.4192), GAL10 (orf19.3672)
Pseudohyphal growth 0.10 2 36 Up STE11 (orf19.844), ALS4 (orf19.4555)
3 Down FKH2 (orf19.5389), ASH1 (orf19.5343), CPH2 (orf19.1187)
Signal transduction during filamentous growth 0.43 1 8 Down CDC5 (orf19.6010)
Hyphal growth 0.73 3 139 Up ALS2 (orf19.1097), UTR2 (orf19.1671), ALS4 (orf19.4555)
5 Down FKH2 (orf19.5389), MCM1 (orf19.7025), CDC14 (orf19.4192), CPH2 (orf19.1187), SSK1 (orf19.5031)
Other 4 Up SSU1 (orf19.7313), PHHB (orf19.2079), FGR3 (orf19.3845), FGR43 (orf19.4786)
7 Down CLB4 (orf19.7186), CZF1 (orf19.3127), orf19.6720, ECM4 (orf19.2613), GAT2 (orf19.4056), CHA1 (orf19.1996), FGR41 (orf19.4910)
a

That is, the significance of overrepresentation of listed GO terms comparing the transcriptional profiles of strains KTY31 to KTY3 in the presence of doxycycline.

b

That is, the number of differentially regulated genes belonging to the listed GO terms.

c

That is, the number of genes belonging to the listed GO terms on a genome-wide level.