TABLE 2.
Primer name | Sequence (restriction enzyme)a | Purpose |
---|---|---|
enoup5 | 5′-TTGCGGCCGCTCAAGCACGGCGGTCTG-3′ (NotI) | PCR amplification of the upstream flanking DNA fragment of the enolase gene from A. hydrophila |
enoup3 | 5′-CCAGATCTATGTGTATTTCCTCAGGT-3′ (BglII) | |
enodn5 | 5′-GTAGATCTATCGTCGCCGGTTCTCTTG-3′ (BglII) | PCR amplification of the downstream flanking DNA fragment of the enolase gene from A. hydrophila |
enodn3 | 5′-TTTCTAGAGGATCCTCGGATCGGCGG-3′ XbaI | |
eno5 | 5′-GTAGTACTATGTCCAAGATCGTTAAAGTG-3′ (ScaI) | PCR amplification of the DNA fragment encoding the enolase gene from A. hydrophila for cloning into plasmid pBR322 |
eno3 | 5′-TCCTGCAGTTAAGCCTGGTTCTTCACTTC-3′ (PstI) | |
Sm5 | 5′-ATGCGCTCACGCAACTGGTC-3′ | Identification of the deletion of the enolase gene on the chromosome of A. hydrophila |
Sm3 | 5′-TTATTTGCCGACTACCTTGG-3′ | |
ENT5 | 5′-CCTACAAGTCCGTCAACGAG-3′ | |
ENT3 | 5′-ACGTGCAGCGCATTGAGCAC-3′ | |
enoF | 5′-CGCGGATCCATGTCCAAGATCGTTAAAGTGATCGG-3′ (BamHI) | Cloning of the native eno gene into pALTER-1 vector |
enoR | 5′-CCCAAGCTTTAAGCCTGGTTCTTCACTTCTTTCAG-3′ (HindIII) | |
enoK-Q343 | 5′-GCCAACTCCATCCTGATC(A)CAGTTCAACCAGATCGG-3′ | Site-directed mutagenesis reactions |
enoK-M394 | 5′-CCGCTGCTGGCCAGATCA(A)TGACCGGTTCCATGAGC-3′ | |
enoK-L420 | 5′-AAGCCCTGGGTGCC(AA)TTGGCTCCGTTCCGCGGTCTG 3′ | |
enoK-N427 | 5′-GGGTGCCAAGGCTCCGTTCCGCGGTCTGAA(A)TGAAG-3′ | |
enoK-R430 | 5′-TCCGCGGTCTGAAAGAAGTGA(A)GGAACCAGGCTTAA-3′ | |
enoN | 5′-GGGTTTCATATGTCCAAGATCGTTAAAGTGATCGGTCGTG 3′ (NdeI) | Cloning of the enolase gene (native or mutated) into pET-30a(+) vector for hyperexpression |
enoC | 5′-CCCCTCGAGAGCCTGGTTCTTCACTTCTTTCAGACCGCGG 3′ (XhoI) | |
enoC427 | 5′-CCCCTCGAGAGCCTGGTTCTTCACTTC(T)ATTCAGACCGCGG-3′ (XhoI) | |
enoC430 | 5′-CCCCTCGAGAGCCTGGTTC(T)CTCACTTCTTTCAGACCGCGG-3′ (XhoI) |
The underlining indicates the restriction endonuclease site. Boldface indicates mutated nucleotide(s) in the enolase gene of A. hydrophila; the original nucleotide is shown in parentheses. All primers were developed for this study.