TABLE 3.
Seventeen specifically examined SARs and their presence/absence among the Brucella genomes and Ochrobactrum anthropia
| SAR | Other name | tRNA | Size (kb) | Presence/absence of SARs in:
|
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
B. suis strain
|
B. canis | B. ceti | B. ovis |
B. melitensis strain
|
B. abortus strain
|
O. anthropi (%) | ||||||||
| 23445 | 1330 | 16 M | 23457 | 9941 | 2308 | S19 | ||||||||
| Chromosome 1 | ||||||||||||||
| SAR 1-2 | 8T | tRNA-Thr | 8,193 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 28 |
| SAR 1-3 | GI-1 | tRNA-Thr | 18,298 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 15 |
| SAR 1-5 | tRNA-Arg | 13,859 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 14 | |
| SAR 1-6 | tRNA-Val and tRNA-Asp | 4,038 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 49 | |
| SAR 1-7 | 15G | tRNA-Gly | 15,116 | √ | √ | √ | √ | abs | √ | √ | √ | √ | √ | 35 |
| SAR 1-8 | tRNA-Leu and tRNA-Leu | 7,213 | √ | √ | √ | √ | part | √ | √ | √ | √ | √ | 24 | |
| SAR 1-12 | 2I | tRNA-Ile | 2,007 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 0 |
| SAR 1-14 | tRNA-Gly | 4,199 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 37 | |
| SAR 1-16 | tRNA-Ser | 10,483 | √ | √ | √ | √ | part | √ | √ | √ | √ | √ | 36 | |
| SAR 1-17 | 19,446 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 44 | ||
| Chromosome 2 | ||||||||||||||
| SAR 2-1 | 11,103 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 15 | ||
| SAR 2-4 | 1,852 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 14 | ||
| SAR 2-5 | IncP | 19,305 | √ | √ | √ | √ | abs | abs | abs | abs | abs | abs | 4 | |
| SAR 2-7 | tRNA-Cys | 4,437 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 17 | |
| SAR 2-8 | 4,856 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 6 | ||
| SAR 2-10 | 14T | tRNA-Thr | 14,312 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 10 |
| SAR 2-11 | tRNA-Leu and tRNA-Ser | 3,864 | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | 39 | |
In the Brucella genomes, if the SAR is completely present, this is noted by a check mark; if it is only partially present, this is noted by part; and if it is completely absent, this is noted by abs. All of these SARs are at best only partially present in O. anthropi, and the last column provides the estimated coverage.