TABLE 2.
Differentially expressed genes in CF39s and CF39wt
| PA no. | Gene | Change (fold) | Functiona |
|---|---|---|---|
| PA0083 | 2.48 | T6SS HSI-I conserved hypothetical protein | |
| PA0084 | 2.94 | T6SS HSI-I conserved hypothetical protein | |
| PA0085 | hcp1 | 2.70 | T6SS HSI-I Hcp1 |
| PA0088 | 2.13 | T6SS HSI-I hypothetical protein | |
| PA0090 | clpV1 | 2.29 | T6SS HSI-I probable ClpV1 |
| PA0091 | vgrG1a | 2.02 | T6SS HSI-I VgrG1a |
| PA0095 | vgrG1b | 2.28 | T6SS HSI-I VgrG1b |
| PA0285 | −2.04 | Putative diguanylate cyclase/phosphodiesterase (GGDEF/EAL domains) | |
| PA0861 | 2.37 | Putative diguanylate cyclase/phosphodiesterase (GGDEF/EAL domains) | |
| PA1079 | flgD | −2.26 | Flagellar basal body rod modification protein FlgD |
| PA1081 | flgF | −2.23 | Flagellar basal body rod protein FlgF |
| PA1097 | fleQ | −2.00 | Transcriptional regulator FleQ |
| PA1105 | fliJ | −2.50 | Flagellar protein FliJ |
| PA1168 | 225.21 | Hypothetical protein | |
| PA1169 | 261.52 | Probable lipoxygenase | |
| PA1431 | rsaL | 2.61 | Regulatory protein RsaL |
| PA1656 | 3.14 | T6SS HSI-II hypothetical protein | |
| PA1657 | 5.28 | T6SS HSI-II conserved hypothetical protein | |
| PA1658 | 5.86 | T6SS HSI-II conserved hypothetical protein | |
| PA1659 | 5.62 | T6SS HSI-II hypothetical protein | |
| PA1660 | 4.74 | T6SS HSI-II hypothetical protein | |
| PA1661 | 2.22 | T6SS HSI-II hypothetical protein | |
| PA1662 | clpV2 | 2.90 | T6SS HSI-II probable ClpV2 |
| PA1663 | 2.15 | T6SS HSI-II probable transcriptional regulator | |
| PA1664 | 2.59 | T6SS HSI-II hypothetical protein | |
| PA1667 | 3.45 | T6SS HSI-II hypothetical protein | |
| PA1668 | 2.83 | T6SS HSI-II hypothetical protein | |
| PA1669 | icmF2 | 2.23 | T6SS HSI-II IcmF2 |
| PA1871 | lasA | 8.84 | LasA protease precursor |
| PA2193 | hcnA | 33.91 | Hydrogen cyanide synthase HcnA |
| PA2194 | hcnB | 25.20 | Hydrogen cyanide synthase HcnB |
| PA2195 | hcnC | 24.31 | Hydrogen cyanide synthase HcnC |
| PA2231 | pslA | 2.04 | PslA |
| PA2232 | pslB | 2.00 | Probable phosphomannose isomerase/GDP-mannose pyrophosphorylase |
| PA2233 | pslC | 2.40 | Probable glycosyl transferase |
| PA2235 | pslE | 2.42 | Hypothetical protein |
| PA2239 | pslI | 2.31 | Probable transferase |
| PA2361 | icmF3 | 2.62 | T6SS HSI-III IcmF3 |
| PA2364 | 2.11 | T6SS HSI-III hypothetical protein | |
| PA2365 | 3.24 | T6SS HSI-III conserved hypothetical protein | |
| PA2366 | 9.28 | T6SS HSI-III conserved hypothetical protein | |
| PA2367 | hcp3 | 2.26 | T6SS HSI-III Hcp3 |
| PA2368 | 2.59 | T6SS HSI-III hypothetical protein | |
| PA2371 | clpV3 | 2.21 | T6SS HSI-III ClpV3 |
| PA2372 | 6.69 | T6SS HSI-III hypothetical protein | |
| PA2440 | 8.45 | Hypothetical protein | |
| PA2441 | 12.80 | Hypothetical protein | |
| PA2567 | 6.29 | Putative diguanylate cyclase/phosphodiesterase (GGDEF/EAL domains) | |
| PA2652 | −2.34 | Probable chemotaxis transducer | |
| PA2653 | −6.19 | Probable transporter | |
| PA3058 | pelG | 4.35 | PelG |
| PA3059 | pelF | 5.73 | PelF |
| PA3060 | pelE | 7.39 | PelE |
| PA3061 | pelD | 11.47 | PelD |
| PA3062 | pelC | 15.74 | PelC |
| PA3063 | pelB | 5.08 | PelB |
| PA3064 | pelA | 5.06 | PelA |
| PA3361 | lecB | 8.08 | Fucose-binding lectin PA-IIL |
| PA3476 | rhlI | 2.11 | Autoinducer synthesis protein RhlI |
| PA3477 | rhlR | 2.39 | Transcriptional regulator RhlR |
| PA3478 | rhlB | 4.73 | Rhamnosyltransferase chain B |
| PA3479 | rhlA | 11.00 | Rhamnosyltransferase chain A |
| PA3704 | wspE | −2.00 | Probable chemotaxis sensor/effector fusion protein |
| PA3705 | wspD | −2.87 | Hypothetical protein |
| PA3706 | wspC | −2.27 | Probable protein methyltransferase |
| PA3707 | wspB | −2.00 | Hypothetical protein |
| PA3708 | wspA | −2.28 | Probable chemotaxis transducer |
| PA3724 | lasB | 10.46 | Elastase LasB |
| PA4307 | pctC | −8.17 | Chemotactic transducer PctC |
| PA4624 | 6.22 | Hypothetical protein | |
| PA4625 | 7.60 | Hypothetical protein | |
| PA4843 | −3.04 | Putative diguanylate cyclase (GGDEF domain) |
a
T6SS, type VI secretion system.