TABLE 3.
Genes differentially expressed in an elevated c-di-GMP background
| PA no. | Gene | Change (fold) | Function |
|---|---|---|---|
| PA0020 | −1.6 | Hypothetical protein | |
| PA0026 | plcB | −1.9 | Phospholipase C |
| PA0408 | pilG | −1.6 | Response regulator, twitching motility |
| PA0409 | pilH | −1.9 | Response regulator, twitching motility |
| PA0652 | vfr | −1.5 | Regulator of virulence |
| PA1077 | flgB | −2.1 | Flagellar basal body rod protein |
| PA1078 | flgC | −2.3 | Flagellar basal body rod protein |
| PA1079 | flgD | −1.8 | Flagellar basal body rod modification |
| PA1080 | flgE | −1.9 | Flagellar hook protein |
| PA1081 | flgF | −2.4 | Flagellar basal body rod protein |
| PA1082 | flgG | −2.0 | Flagellar basal body rod protein |
| PA1083 | flgH | −2.0 | Flagellar L-ring protein precursor |
| PA1086 | flgK | −1.7 | Flagellar hook-associated protein |
| PA1087 | flgL | −1.9 | Flagellar hook-associated protein type 3 |
| PA1089 | −2.0 | Hypothetical protein | |
| PA1093 | −2.1 | Hypothetical protein | |
| PA1094 | fliD | −2.0 | Flagellar capping protein |
| PA1095 | −1.8 | Hypothetical protein | |
| PA1096 | −2.0 | Hypothetical protein | |
| PA1098 | fleS | −1.8 | Two-component sensor, flagellum regulation |
| PA1099 | fleR | −2.2 | Two-component regulator, flagellum regulation |
| PA1100 | fliE | −1.7 | Flagellar hook-basal body complex |
| PA1101 | fliF | −1.8 | Flagellum M-ring outer membrane protein |
| PA1441 | −2.0 | Hypothetical protein | |
| PA1452 | flhA | −1.8 | Flagellar biosynthesis protein |
| PA1456 | cheY | −1.6 | Chemotaxis response regulator |
| PA1545 | −2.2 | Hypothetical protein | |
| PA1705 | pcrG | −2.0 | Regulator in type III secretion |
| PA1718 | pscE | −1.8 | Type III export protein PscE |
| PA2654 | −2.4 | Methyl-accepting chemotaxis transducer | |
| PA2761 | −3.1 | Hypothetical protein | |
| PA3351 | flgM | −1.5 | Anti-sigma factor, flagellum regulation |
| PA3526 | motY | −1.9 | Sodium-driven flagellum motor protein |
| PA3713 | spdH | −2.6 | Spermidine dehydrogenase |
| PA3762 | −2.4 | Hypothetical protein | |
| PA4221 | fptA | −2.9 | Fe(III)-pyochelin outer membrane receptor |
| PA4296 | pprB | −1.9 | Two-component response regulator |
| PA4307 | pctC | −7.2 | Methyl-accepting chemotaxis transducer |
| PA4309 | pctA | −2.1 | Methyl-accepting chemotaxis transducer |
| PA4310 | pctB | −1.7 | Methyl-accepting chemotaxis transducer |
| PA4523 | −5.1 | Hypothetical protein | |
| PA4616 | −3.3 | Probable C4-dicarboxylate-binding protein | |
| PA4633 | −2.3 | Methyl-accepting chemotaxis transducer | |
| PA4704 | −2.2 | Hypothetical protein | |
| PA5040 | pilQ | −1.8 | Type 4 fimbrial biogenesis protein |
| PA5041 | pilP | −1.9 | Type 4 fimbrial biogenesis protein |
| PA5042 | pilO | −2.3 | Type 4 fimbrial biogenesis protein |
| PA5043 | pilN | −2.0 | Type 4 fimbrial biogenesis protein |
| PA5044 | pilM | −2.0 | Type 4 fimbrial biogenesis protein |
| PA5072 | −2.2 | Methyl-accepting chemotaxis transducer | |
| PA5122 | −1.8 | Hypothetical protein | |
| PA5139 | −1.7 | Hypothetical protein | |
| PA5404 | −2.3 | Hypothetical protein | |
| PA0169 | 5.1 | Putative diguanylate cyclase (GGDEF protein) | |
| PA0170 | 4.4 | Hypothetical protein | |
| PA0171 | 3.9 | Hypothetical protein | |
| PA0172 | 3.6 | Hypothetical protein | |
| PA2231 | pslA | 2.4 | Polysaccharide biosynthesis protein |
| PA2232 | pslB | 4.7 | Polysaccharide biosynthesis protein |
| PA2406 | 4.3 | Hypothetical protein | |
| PA2407 | 4.6 | Probable adhesion protein | |
| PA2440 | 5.4 | Putative polysaccharide deacteylase | |
| PA2441 | 5.7 | ||
| PA2560 | 2.0 | Hypothetical protein | |
| PA3340 | 2.2 | Hypothetical protein | |
| PA3819 | 1.7 | Hypothetical protein | |
| PA3901 | fecA | 1.7 | Fe(III) dicitrate transport protein |
| PA4312 | 2.1 | Hypothetical protein | |
| PA4624 | 9.7 | Hypothetical protein | |
| PA4625 | 11.7 | Putative hemagglutinin-adhesin | |
| PA5212 | 1.6 | Hypothetical protein | |
| PA5526 | 1.8 | Hypothetical protein |