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. Author manuscript; available in PMC: 2009 May 14.
Published in final edited form as: Nat Protoc. 2008;3(12):1832–1847. doi: 10.1038/nprot.2008.184
Backbone Displays connected Cα atoms
Spacefill Displays spheres on each atom
Aligned fragment Displays only that part of the template structure that aligns with the template
Whole template Displays the entire template with the part that is aligned in green and the rest in gray