TABLE 1.
Sequences of oligonucleotides for functional assays and cloning
Underlined nucleotide sequences in the primer pairs for cloning represent the specified restriction enzyme sites.
Oligonucleotide Sequences | |
---|---|
Site-Directed Mutagenesis Experiment | |
rs60273882 (− 241C>T) | 5′-GTCTCAAGCGATCTGCCCGTCTCGGCC-3′ |
rs2413775 (− 146A>T) | 5′-CCTGCAAAACAGTCTTAAAAACATATAATATTTAACTTGAGAGGTGCA-3′ |
rs2899376 (− 115G>T) | 5′-GGTGCAGTCCTCCTCTACATTGAGGGCAGG-3′ |
rs60354957 (− 14A>T) | 5′-CCTCCCTCGCAGCTGTGCTTTTCTTTCAGTC-3′ |
rs61553676 (− 1G>A) | 5′-CTCGCAGCTGAGCTTTTCTTTCAATCCTTCACTGAG-3′ |
EMSA probes and competitors | |
−146-A | 5′-GGGCTTAAAAACATATAA TAATTAACTTGAGAGGTGCAGTC −3′ |
−146-T | 5′-GGGCTTAAAAACATATAATATTTAACTTGAGAGGTGCAGTC −3′ |
HNF1α per | 5′-GGGCGCAAAAGAAAGTTAATCATTAACCCGGGAAACAGC-3′ (Kikuchi et al., 2006) |
Cloning | |
CNT2 basal promoter | 5′-ATAACGCGTTATCCTGGCTGGTCTCAAGCG-3′ (MluI) |
(−265/+ 100) | 5′-ATAAGATCTATCTCTTTAAAAATTTGTAAAT-3′ (BglII) |
HNF1α | 5′-AAGCTTGCCATGGTTTCTAAACTGAGCC −3′ (HindIII) |
5′-GAATTCTGGTTACTGGGAGGAAGAGGCC −3′ (EcoRI) | |
HNF1β | 5′-AAGCTTGAAAATGGTGTCCAAGCTCACG −3′ (HindIII) |
5′-GAATTCGGCATCACCAGGCTTGTAGAGG −3′ (EcoRI) |