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. 2008 Dec 19;328(3):699–707. doi: 10.1124/jpet.108.147207

TABLE 1.

Sequences of oligonucleotides for functional assays and cloning

Underlined nucleotide sequences in the primer pairs for cloning represent the specified restriction enzyme sites.

Oligonucleotide Sequences
Site-Directed Mutagenesis Experiment
rs60273882 (− 241C>T) 5′-GTCTCAAGCGATCTGCCCGTCTCGGCC-3′
rs2413775 (− 146A>T) 5′-CCTGCAAAACAGTCTTAAAAACATATAATATTTAACTTGAGAGGTGCA-3′
rs2899376 (− 115G>T) 5′-GGTGCAGTCCTCCTCTACATTGAGGGCAGG-3′
rs60354957 (− 14A>T) 5′-CCTCCCTCGCAGCTGTGCTTTTCTTTCAGTC-3′
rs61553676 (− 1G>A) 5′-CTCGCAGCTGAGCTTTTCTTTCAATCCTTCACTGAG-3′
EMSA probes and competitors
−146-A 5′-GGGCTTAAAAACATATAA TAATTAACTTGAGAGGTGCAGTC −3′
−146-T 5′-GGGCTTAAAAACATATAATATTTAACTTGAGAGGTGCAGTC −3′
HNF1α per 5′-GGGCGCAAAAGAAAGTTAATCATTAACCCGGGAAACAGC-3′ (Kikuchi et al., 2006)
Cloning
CNT2 basal promoter 5′-ATAACGCGTTATCCTGGCTGGTCTCAAGCG-3′ (MluI)
(−265/+ 100) 5′-ATAAGATCTATCTCTTTAAAAATTTGTAAAT-3′ (BglII)
HNF1α 5′-AAGCTTGCCATGGTTTCTAAACTGAGCC −3′ (HindIII)
5′-GAATTCTGGTTACTGGGAGGAAGAGGCC −3′ (EcoRI)
HNF1β 5′-AAGCTTGAAAATGGTGTCCAAGCTCACG −3′ (HindIII)
5′-GAATTCGGCATCACCAGGCTTGTAGAGG −3′ (EcoRI)