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Comparison of execution times and sensitivity
| Program | Time | Reads |
|---|---|---|
| (hh:mm:ss) | aligned | |
| ELAND | 32:18 | 0 |
| BLAST (-F F -W 9) | 34:45:19 | 21 684 |
| BLAST (-F F -W 11) | 22:57:53 | 15 230 |
| SOAP | 19:28 | 16 024 |
| SOAP gapped | 37:24 | 18 681 |
| SeqMap ungapped | 5:10:00 | 19 638 |
| SeqMap gapped (up to three gaps) | 68:00:00 | 28 625 |
| ProbeMatch (up to three gaps) | 2:41:00 | 28 625 |
