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. 2009 Jun 5;5(6):e1000502. doi: 10.1371/journal.pgen.1000502

Table 2. Genes within Class 3 putative transposed segments, based on annotations in Saccharomyces Genome Database (SGD) November 2008 [67].

TS Gene Name Synonym Feature Type Description GO Molecular Function GO Biological Process
1 YAR070C ORF, Dubious Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data unknown unknown
1 YAR071W PHO11 ORF, Verified Phosphate metabolism acid phosphatase activity phosphate metabolic process
4 YDR275W BSC2 ORF, Verified Bypass of stop codon unknown unknown
4 YDR276C PMP3 ORF, Verified Plasma membrane proteolipid unknown cation transport/ regulation of membrane potential
7 YGL263W COS12 ORF, Verified Conserved Sequence unknown unknown
7 YGL262W ORF, Uncharacterized Putative protein of unknown function; not an essential gene unknown unknown
7 YGL261C PAU11 ORF, Uncharacterized Putative protein of unknown function; mRNA expression appears to be regulated by SUT1 and UPC2; seriPAUperin unknown unknown
15.1 YOL161C PAU20 ORF, Uncharacterized Hypothetical protein; seriPAUperin unknown unknown
15.1 YOL160W ORF, Dubious Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data unknown unknown
15.1 YOL159C ORF, Verified Soluble protein of unknown function; deletion mutants are viable and have elevated levels of Ty1 retrotransposition and Ty1 cDNA unknown unknown
15.1 YOLCDELTA2 long terminal repeat Ty1 LTR not available not available
15.1 YOL158C ENB1 ORF, Verified Enterobactin ferric-enterobactin transmembrane transporter activity ferric-enterobactin transport
15.1 YOL157C ORF, Uncharacterized Putative protein of unknown function unknown unknown
15.2 YOR389W ORF, Uncharacterized Putative protein of unknown function; expression regulated by copper levels unknown unknown
15.2 YOR390W ORF, Uncharacterized Putative protein of unknown function unknown unknown
16 YPR194C OPT2 ORF, Verified Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans oligopeptide transporter activity oligopeptide transport