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. Author manuscript; available in PMC: 2009 Oct 1.
Published in final edited form as: Genes Immun. 2009 Mar 5;10(3):201–209. doi: 10.1038/gene.2009.11

Table 1.

Association of replicated CASP GWAS signals with PsA.

PsC vs. control
(3523 cases, 5942 controls)
PsA vs. control
(1755 cases, 5942 controls)
PsA vs. PsC
(1755 cases, 3523 controls)
Marker Chr Position
(bld 36.1)
Nearby
Notable
Gene
Alleles
(risk/
nonrisk)
· freq
cases
freq
controls
meta
OR
meta
allelic
p-value
freq
cases
freq
controls
meta
OR
meta
allelic
p-value
freq
cases
freq
controls
meta
OR
meta
allelic
p-value
rs12191877 6 3.1E+O7 HLA-C T/C 0.316 0.139 2.87 2.98E-178 0.260 0.139 2.34 6.26E-62 0.260 0.316 0.87 6.14E-03
rs2082412 S I.6E+O8 1L12B G/A 0.846 0.797 1.42 4.57E-18 0.861 0.797 1.63 3.90E-16 0.861 0.846 1.19 9.51E-03
rs17728338 5 1.5E+O8 TNIP1 A/G 0.083 0.054 1.56 1.40E-13 0.100 0.054 1.78 2.32E-14 0.100 0.083 1.15 7.43E-02
rs20541 5 1.3E+O8 IL13 G/A 0.821 0.787 1.24 3.77E-08 0.833 0.787 1.34 1.35E-07 0.833 0.821 1.10 1.13E-01
rs610604 6 1.4E+08 TNFAIP3 G/T 0.364 0.318 1.23 3.O7E-1O 0.362 0.318 1.18 2.94E-04 0.362 0.364 0.98 6.70E-01
rs2O668O7 12 5.5E+O7 IL23A C/G 0.949 0.932 1.33 1.9OE-O5 O.955 0.932 1.55 9.49E-06 0.955 0.949 1.15 2.25E-01
rs2201841 1 6.7E+07 IL23R G/A 0.340 0.295 1.23 1.75E-1O 0.318 0.295 1.07 1.42E-01 0.318 0.340 0.89 1.50E-02