Table 3.
Genotype and allelea frequencies in 18 populations from lowlands and highlands of Nepal
Population | n | Genotype | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
TNF (rs1800629) | FCGRIIA (rs1801274) | ||||||||||
G | GG | GA | AA | pb | C | CC | CT | TT | pb | ||
Baram | 38 | 1.00 | 1.00 | N.Ac | 0.37 | 0.14 | 0.46 | 0.40 | 0.07 | ||
Chantyal | 23 | 0.89 | 0.79 | 0.21 | 1.00 | 0.50 | 0.25 | 0.5 | 0.25 | 0.08 | |
Chepangd | 27 | 1.00 | 1.00 | N.A | 0.20 | 0.04 | 0.32 | 0.62 | 1.00 | ||
Danuwar | 30 | 0.70 | 0.49 | 0.42 | 0.09 | 0.69 | 0.05 | 0.10 | 0.90 | 1.00 | |
Dhimal | 22 | 0.89 | 0.79 | 0.21 | 1.00 | 0.27 | 0.08 | 0.20 | 0.72 | 0.63 | |
Dura | 35 | 0.96 | 0.92 | 0.08 | 1.00 | 0.31 | 0.10 | 0.43 | 0.47 | 1.00 | |
Ghale | 25 | 0.98 | 0.96 | 0.04 | 1.00 | 0.16 | 0.13 | 0.70 | 1.00 | ||
Gurung | 46 | 0.93 | 0.86 | 0.14 | 1.00 | 0.41 | 0.17 | 0.48 | 0.35 | 0.23 | |
High Caste Newar | 29 | 1.00 | 1.00 | N.A | 0.52 | 0.27 | 0.50 | 0.23 | 1.00 | ||
Kumal | 25 | 0.88 | 0.77 | 0.21 | 0.02 | 0.29 | 0.18 | 0.03 | 0.30 | 0.67 | 1.00 |
Magar | 45 | 0.94 | 0.88 | 0.11 | 0.01 | 0.11 | 0.21 | 0.05 | 0.33 | 0.62 | 0.38 |
Majhi Bote | 27 | 0.85 | 0.72 | 0.26 | 0.02 | 0.45 | 0.19 | 0.04 | 0.31 | 0.65 | 0.19 |
Newar | 50 | 0.99 | 0.98 | 0.02 | 1.00 | 0.33 | 0.11 | 0.44 | 0.45 | 0.75 | |
Sherpa | 24 | 0.75 | 0.56 | 0.38 | 0.06 | 0.59 | 0.23 | 0.05 | 0.35 | 0.60 | 0.56 |
Tamang | 48 | 0.97 | 0.94 | 0.06 | 1.00 | 0.26 | 0.07 | 0.38 | 0.55 | 1.00 | |
Thakali | 29 | 0.93 | 0.86 | 0.13 | 0.01 | 0.10 | 0.31 | 0.09 | 0.43 | 0.48 | 1.00 |
Tharu | 34 | 0.85 | 0.72 | 0.25 | 0.03 | 0.12 | 0.25 | 0.06 | 0.38 | 0.56 | 0.39 |
Wambule | 29 | 1.00 | 1.00 | N.A | 0.16 | 0.03 | 0.26 | 0.71 | 0.11 |
Frequency of the protective alleles G and C at TNF and FCGRIIA, respectively
p values after testing for departure from Hardy-Weinberg equilibrium (random association of alleles in diploid individuals)
N.A. not applicable
The populations in bold live in the malarial lowlands of Nepal. The remaining groups live in regions of high altitudes, which are malaria-free