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. Author manuscript; available in PMC: 2010 Mar 15.
Published in final edited form as: Virology. 2009 Jan 10;385(2):425–433. doi: 10.1016/j.virol.2008.11.047

Table 1. Primer sequences used for qRT-PCR.

Gene
GenBank No.
Primer Sequence (5′-3′) Amplicon
(bp)
Tm (°C)
Claudin-1 NM_021101
 Forward GAA GTG CTT GGA AGA CGA TGA G 190 56
 Reverse GCC CAG CCA GTG AAG AAG G

Claudin-5 NM_003277
 Forward CTC TGC TGG TTC GCC AAC AT 87 57
 Reverse CAG CTC GTA CTT CTG CGA CA

E-selectin NM_000450
 Forward TGA GAC AGA GGC AGC AGT G 199 57
 Reverse CCG TGG AGG TGT TGT AAG AC

GAPDH BC025925
 Forward AGT TAG CCG CAT CTT CTT TTG C 96 57
 Reverse CAA TAC GAC CAA ATC CGT TGA CT

ICAM-3 NM_002162
 Forward AGC GGC AGT TAC CAT GTT AGG G 146 58
 Reverse GGC TTT ATT GGT GCG GAA TCT GAG

Occludin DQ892423
 Forward TCC AGA GTC TTC CTA TAA ATC CAC 106 57
 Reverse ACC ACC GCT GCT GTA ACG

PECAM NM_000442
 Forward GCA GTC TTC ACT CTC AGG ATG 143 57
 Reverse GGC AGG CTC TTC ATG TCA AC

VCAM-1 BC068490
 Forward TGC TGC TCA GAT TGG AGA CTC 113 55
 Reverse TCC TCA CCT TCC CGC TCA G

ZO1 NM_003257
 Forward GAA TGA TGG TTG GTA TGG TGC G 191 60
 Reverse TCA GAA GTG TGT CTA CTG TCC G

WNV (ENV) NC_009942
 Forward CAG ACC ACG CTA CGG CG 112 60
 Reverse CTA GGG CCG CGT GGG
 Probe TCT GCG GAG AGT GCA GTC TGC GAT