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. 2009 Apr 27;10:126. doi: 10.1186/1471-2105-10-126

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Copyright © 2009 Lemey et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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HIV-1 Neighbor-net and maximum likelihood trees. (a) Neigbor-net for the HIV-1 group M data set excluding subtype G and subtype K sequences. Only splits are shown that were present in 75% of 1000 bootstrap replicates. Conflicting phylogenetic relationships are indicated with arrows. (b) HIV-1 Maximum likelihood trees for the structural genes gag, pol and env. The numbers at the nodes represent the bootstrap support percentages based on 1000 replicates. The subtype J sequences are indicated with a rectangle.