Table 5.
Bioinformatics on the four highly informative SNPs.
| SNP markers | ||||
| rs29016875 | rs29015574 | rs29024867 | rs41257187 | |
| Chromosome | 10 | 9 | 4 | 1 |
| Gene candidates (NCBI-BLASTN) | ||||
| Name: | Cytoplasmic dynein light chain (NW 001492841) |
Rab3A-interacting molecule (NW_001495537) | Collagen I, alpha2 (NW 001494859) |
Integrin β5 (NW001493888) |
| Length: | 442/501 | 474/501 | 500/501 | 76/78 |
| Identity: | 96% | 99% | 99% | 98% |
| E-Value: | 9 × 10-122 | 0.00 | 0.00 | 4 × 10-32 |
| Transcription factors (TRANSFAC-BLASTX) | ||||
| No hits found | MEF-2D (Xl; T-01771) |
Ceh-24 (S.Cb; T-03376) |
No hits found | |
| Irx-3 (Mm; T-02439) |
RAR-β3 (Mm; T-01339) |
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S.Cb, Xl, and Mm stand for S. Caenorhabditis Briggsae, Xenopus laevis, and Mus musculus, respectively.
Irx, Ceh, and RAR stand for Iroquois homeobox, Caenorhabditis elegance homeodomain factor, and Retinoic acid receptor, respectively.