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. Author manuscript; available in PMC: 2009 May 20.
Published in final edited form as: Nat Genet. 2008 Sep;40(9):1076–1083. doi: 10.1038/ng.193

Table 1.

Duplication alignments flanking MAPT inversion

Sequence Alignments* Length (bp) %identity K2M SE
PTR 2 110279 98.73 0.012814 0.000471
H1 6 169796 98.34 0.016892 0.000920
H2 8 441832 99.30 0.007002 0.000517
*

Only pairwise sequence alignments > 5 kbp mapping within the two duplication blocks flanking the inversion were considered; in H1 and PTR all pairwise alignments are in an inverted orientation with respect to one another; only within the H2 haplotype were three alignments identified in a direct orientation (corresponding to 97,301 bp with 99.53% sequence identity).