Table 4.
Differentially expressed genes in LA1589 sun NILs
| Gene ID* | Fold Changes | Gene annotation | Category | |
| Flower bud | ||||
| TC119205 | -2.0 | Defensin, DEFL2 | Defense response | |
| Flower | ||||
| TC119205 | -3.4 | Defensin, DEFL2 | Defense response | |
| TC123918 | -1.6 | Pyridoxal 5'-phosphate-dependant histidine decarboxylase | Metabolism | |
| TC120795 | -1.5 | Harpin-induced protein 1 (Hin1) (AT5G11890). | Unknown | |
| TC130586 | -1.5 | Putative GPI protein (At5g53870) | Energy pathways | |
| TC118655 | -1.5 | Unknown | Unknown | |
| TC129091 | -1.5 | Weakly similar to potato resistance gene cluster AF265664. | Defense response | |
| TC119275 | -1.5 | Auxin-responsive family protein (AT3G25290) | Developmental processes | |
| TC128245 | -1.5 | Hypothetical protein | Unknown | |
| TC131486 | -1.5 | Hypothetical protein | Unknown | |
| TC121636 | -1.5 | Unknown | Unknown | |
| TC130702 | -1.4 | Plant thionin family protein (AT1G12663) | Unknown | |
| TC122761 | -1.4 | Unknown | Unknown | |
| TC116706 | -1.4 | Unknown | Unknown | |
| TC123023 | -1.4 | Plastocyanin-like domain-containing protein (AT5G53870) | Energy pathways | |
| TC126072 | 1.4 | DNAJ-LIKE 20 (At4g13830) | Metabolism | |
| TC120357 | 1.4 | Universal stress protein (USP) family protein (At3g62550) | Stress response | |
| TC127119 | 1.4 | Thiamine biosynthesis family protein/thiC family protein (AT2G29630) | Biosynthetic process | |
| TC124373 | 1.4 | Unknown protein (AT4G32480) | Unknown | |
| TC131247 | 1.4 | alternative oxidase 2 (AT5G64210) | Energy pathways | |
| TC116590 | 1.4 | 60S ribosomal protein L6 (RPL6A) (AT1G18540) | Biosynthetic process | |
| TC125885 | 1.5 | MEE59 (maternal effect embryo arrest 59) (AT4g37300) | Developmental processes | |
| TC127729 | 1.5 | ALPHA-CRYSTALLIN DOMAIN 31.2 (At1g06460 mRNA) | Stress response | |
| TC116513 | 1.5 | Single-stranded DNA binding protein precursor (AT2G37220) | Stress response | |
| TC123370 | 1.6 | HEPTAHELICAL TRANSMEMBRANE PROTEIN1 (AT5g20270) | Developmental processes | |
| TC124422 | 1.7 | Phi-1. Arabidopsis thaliana phosphate-responsive protein (EXO) | Developmental processes | |
| TC116452 | 1.8 | Pectin methylesterase inhibitor isoform (AT5G62360) | Metabolism | |
| Fruit | ||||
| TC119205 | -2.9 | Defensin, DEFL2 | Defense response | |
| TC130680 | -1.5 | unknown | Unknown | |
| TC116444 | -1.4 | Auxin/aluminum-responsive protein (AT4G27450) | Unknown | |
| TC122863 | -1.4 | Sulfate transporter (AT3G51895) | Transport | |
| TC122115 | 1.4 | proteinase inhibitor isoform | Stress response | |
| TC126601 | 1.4 | Gty37 protein; putative cell wall protein (AT2G20870) | Unknown | |
| TC124142 | 1.4 | 2OG-Fe(II) oxygenase family (AT2G36690) | Biosynthetic process | |
| TC123957 | 1.4 | THI1 protein (AT5G54770) | Biosynthetic process | |
| TC123969 | 1.4 | Late embryogenesis abundant protein | Developmental processes | |
| TC125885 | 1.6 | MEE59 (maternal effect embryo arrest 59) (AT4g37300) | Developmental processes |
*SUN and DEFL1 were not on the Nimblegen Array; genes with RMA expression value smaller than 5 were considered to bee too low expressed and removed from the analysis.