Table 3.
Analysis of similarity of unigenes showing A genome-specific expression patterns and no similarity to A. thaliana CDS
| Unigene | Length unigene | Cognate BAC | BLAST similarity to other organisms* | Genomic context** |
| EE447381 | 597 | KBrB044C04 | A. thaliana F6A14 | Within protein-coding gene |
| EV084643 | 624 | KBrB036M17 | none | Between collinear conserved genes |
| EX052353 | 634 | KBrB052E10 | none | Between collinear conserved genes |
| EX117393 | 960 | KBrB068E07 | none | Within oxidoreductase gene cluster region |
| EX120283 | 685 | KBrB080C12 | none | Between collinear conserved genes |
| EX123623 | 634 | KBrS011B08 | none | Within kinase gene cluster region |
| EX133623 | 682 | KBrB043M07 | none | Between collinear conserved genes |
| EX140739 | 619 | KBrB043B23 | none | Between collinear conserved genes |
| JCVI_31720 | 1258 | KBrH004B20 | none | Between collinear conserved genes |
| JCVI_41745 | 490 | KBrB043L02 | A. thaliana F7O18 | Within protein-coding gene |
| JCVI_6195 | 720 | KBrH009D02 | none | Between collinear conserved genes |
| JCVI_8626 | 708 | KBrH125N23 | none | Between collinear conserved genes |
* E-value threshold < 1E-10
** "Collinear conserved genes" refers to genes of B. rapa and A. thaliana that show conserved synteny