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. Author manuscript; available in PMC: 2009 Jun 5.
Published in final edited form as: Am J Med Genet B Neuropsychiatr Genet. 2008 Dec 5;147B(8):1488–1494. doi: 10.1002/ajmg.b.30693

TABLE III.

Linkage Disequilibrium Information and Estimated Frequencies of Haplotypes in Two Samples

LA children LA parents Finnish
Haplotype 1
 D′ (CI) NA 1.0 (0.84, 1.0) 1.0 (0.80, 1.0)
 R2 NA 0.10 0.07
 C-A1 a 0.56 0.54 0.57
 C-G1 0.21 0.24 0.27
 T-A1 0.21 0.20 0.16
 T-G1 0.02 0.02 0.0
Haplotype 2
 D′ (CI) NA 0.94 (0.87, 0.98) 0.94 (0.87, 0.97)
 R2 NA 0.38 0.49
 C-G2 b 0.22 0.23 0.15
 C-T2 0.31 0.29 0.38
 T-G2 0.45 0.45 0.46
 T-T2 0.02 0.03 0.01

CI denotes 95% confidence interval; NA denotes not available because LD construction was based on founders.

a

Denotes haplotypes for SNPs 1 and 2.

1

Denotes haplotypes for SNPs 1 and 2.

b

Denotes haplotypes for SNPs 3 and 4.

2

Denotes haplotypes for SNPs 3 and 4.