TABLE S 1.

Position of Reference Regions Used in CBS Analysis

Reference Region	Chromosome	Start Nucleotide	End Nucleotide	Variant Type
5q11.2–5q31	5	50500001	143100000	Loss
8q24	8	117700001	146274826	Gain
9p21.3–p22	9	14100001	25500000	Loss
10p12–p15	10	1	670000	Loss
14q22–q31	14	48300001	88900000	Loss
17p12–p13.3	17	1	1590000	Loss
Trisomy 18	18	1	76117153	Gain
Monosomy X	X	1	154913754	Loss