TABLE 1.
Oligonucleotide sequences
Ø in the nucleotide sequence represents a THF residue, and B in the nucleotide sequence represents a biotin-conjugated strand.
| Primer | Length in nt | Sequence |
|---|---|---|
| Upstream | ||
| U1 | 20 | 5′-CGACCGTGCCAGCCTAAAAC-3′ |
| U2 | 19 | 5′-CGACCGTGCCAGCCTAAAA-3′ |
| U3 | 26 | 5′-CGCCAGGGTTTTCCCAGTCACGACCA-3′ |
| U4 | 25 | 5′-CGCCAGGGTTTTCCCAGTCACGACC-3′ |
| U5 | 24 | 5′-CGCCAGGGTTTTCCCAGTCACGAC-3′ |
| U6 | 22 | 5′-CGCCAGGGTTTTCCCAGTCACG-3′ |
| U7 | 20 | 5′-CGCCAGGGTTTTCCCAGTCA-3′ |
| Downstream | ||
| D1 | 55 | 5′-CGACCGTGCCAGCCTAAAAØACTTGCCCGTGCCACCATCCCGACGCCACCTCCTG-3′ |
| D2 | 35 | 5′-ØCTTGCCCGTGCCACCATCCCGACGCCACCTCCTG-3′ |
| D3 | 36 | 5′-ØACTTGCCCGTGCCACCATCCCGACGCCACCTCCTG-3′ |
| D4 | 28 | 5′-GCCGTCGTTTTACAACGACGTGACTGGG-3′ |
| D5 | 35 | 5′-ACTTGCCCGTGCCACCATCCCGACGCCACCTCCTG-3′ |
| D6 | 53 | 5′-BTTCACGCCTGTTAGTTAATTCACTGGCCGTCGTTTTACAACGACGTGACTGGG-3′ |
| Template | ||
| T1 | 49 | 3′-GCGGTCCCAAAAGGGTCAGTGCTGGGCAAAATGTTGCTGCACTGACCCG-5′ |
| T2 | 56 | 3′-GCTGGCACGGTCGGATTTTGTGAACGGGCACGGTGGTAGGGCTGCGGTGGAGGACG-5′ |
| T3 | 53 | 3′-GCTGGCACGGTCGGATTTTGACGGGCACGGTGGTAGGGCTGCGGTGGAGGACG-5′ |