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. 2009 May 29;284(22):15158–15172. doi: 10.1074/jbc.M109.000505

TABLE 1.

Oligonucleotide sequences

Ø in the nucleotide sequence represents a THF residue, and B in the nucleotide sequence represents a biotin-conjugated strand.

Primer Length in nt Sequence
Upstream
U1 20 5′-CGACCGTGCCAGCCTAAAAC-3′
U2 19 5′-CGACCGTGCCAGCCTAAAA-3′
U3 26 5′-CGCCAGGGTTTTCCCAGTCACGACCA-3′
U4 25 5′-CGCCAGGGTTTTCCCAGTCACGACC-3′
U5 24 5′-CGCCAGGGTTTTCCCAGTCACGAC-3′
U6 22 5′-CGCCAGGGTTTTCCCAGTCACG-3′
U7 20 5′-CGCCAGGGTTTTCCCAGTCA-3′
Downstream
D1 55 5′-CGACCGTGCCAGCCTAAAAØACTTGCCCGTGCCACCATCCCGACGCCACCTCCTG-3′
D2 35 5′-ØCTTGCCCGTGCCACCATCCCGACGCCACCTCCTG-3′
D3 36 5′-ØACTTGCCCGTGCCACCATCCCGACGCCACCTCCTG-3′
D4 28 5′-GCCGTCGTTTTACAACGACGTGACTGGG-3′
D5 35 5′-ACTTGCCCGTGCCACCATCCCGACGCCACCTCCTG-3′
D6 53 5′-BTTCACGCCTGTTAGTTAATTCACTGGCCGTCGTTTTACAACGACGTGACTGGG-3′
Template
T1 49 3′-GCGGTCCCAAAAGGGTCAGTGCTGGGCAAAATGTTGCTGCACTGACCCG-5′
T2 56 3′-GCTGGCACGGTCGGATTTTGTGAACGGGCACGGTGGTAGGGCTGCGGTGGAGGACG-5′
T3 53 3′-GCTGGCACGGTCGGATTTTGACGGGCACGGTGGTAGGGCTGCGGTGGAGGACG-5′