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. 2009 Mar 31;18(12):2305–2316. doi: 10.1093/hmg/ddp159

Figure 3.

Figure 3.

The relationship between minor allele frequency and effect size for SNP-phenotype associations exceeding the pre-specified FDR threshold. Effect size was expressed as: (A) variance and (B) as the standardized mean difference for comparisons of homozygous subjects. (C) Examples of SNPs with extreme effects assessed in terms of standardized mean difference.