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. 2009 Jun 3;4(6):e5635. doi: 10.1371/journal.pone.0005635

Table 1. Percent identities of the nucleotide coding sequences of selected HAdV-D53 proteins and their homologsa.

HAdV-D8pb HAdV-D19 HAdV-D22 HAdV-D37 HAdV-D48 HAdV-D49
E1B 19K 94.9 99.3 99 99.5 97.8 97.8
E1B 55K 96 99.2 98.3 99.3 97.4 96.9
IX 95.1 96.1 98.5 96.1 97.1 97.1
IVa2 96.7 98 97.4 98 98.3 91.3
DNA polymerase 95.2 98.1 97.6 98 98 98
pTP 93.3 97.6 96.8 97.9 96.4 96.8
52K 95.7 98 98.1 100 97.9 98.3
penton base 89.2 91.2 92.4 100 90.5 90.1
pVII 79.2 80.4 80.4 83.2 80 80.1
V 85.2 87 87.5 87.2 87.7 87.3
pX 95.1 100 100 100 98.7 99.6
hexon 89.4 90.2 98.4 90.5 90.6 90.4
protease 95.4 96 95.4 99.8 96.5 96.5
22K 89.9 100 98.8 100 99.3 99
pVIII 95.6 98.4 98.5 98.4 98.3 97.7
12.2K 93.2 96 97.5 96 96.9 96.9
CR1-α 52.5 80.5 97 80.5 75.4 77.6
18.4K 95.2 91.1 98.1 91.1 96.2 94.1
CR1-β 100 74.5 85.1 74.5 64.5 58
CR1-γ 86.4 75.3 Ndc 75.3 75.1 80.5
RID-α 93.5 94.2 94.2 94.2 98.2 98.2
RID-β 90.6 87.4 93.2 87.4 94.2 99.2
14.7K 96.7 95.2 97.2 95.2 96.7 97.7
fiber 100 75.1 67.6 75 69 67.6
dTPase 100 48.4 88.9 48.4 85.1 85

Standard nomenclature has been applied so that orthologs have the same name (Davison et al., 2003). Numbers in bold reflect the proposed origin. Italics note the gene with supposed double origin.

a

Percent identities and similarities were determined by global alignment using the EMBOSS needle program with a gap penalty of 10.0 and a gap extension penalty of 5.0.

b

Not present in the genome.

c

Prototype HAdV-D8 strain is Trim isolate – ATCC VR-1604.

HHS Vulnerability Disclosure