Table 1. Percent identities of the nucleotide coding sequences of selected HAdV-D53 proteins and their homologsa.
HAdV-D8pb | HAdV-D19 | HAdV-D22 | HAdV-D37 | HAdV-D48 | HAdV-D49 | |
E1B 19K | 94.9 | 99.3 | 99 | 99.5 | 97.8 | 97.8 |
E1B 55K | 96 | 99.2 | 98.3 | 99.3 | 97.4 | 96.9 |
IX | 95.1 | 96.1 | 98.5 | 96.1 | 97.1 | 97.1 |
IVa2 | 96.7 | 98 | 97.4 | 98 | 98.3 | 91.3 |
DNA polymerase | 95.2 | 98.1 | 97.6 | 98 | 98 | 98 |
pTP | 93.3 | 97.6 | 96.8 | 97.9 | 96.4 | 96.8 |
52K | 95.7 | 98 | 98.1 | 100 | 97.9 | 98.3 |
penton base | 89.2 | 91.2 | 92.4 | 100 | 90.5 | 90.1 |
pVII | 79.2 | 80.4 | 80.4 | 83.2 | 80 | 80.1 |
V | 85.2 | 87 | 87.5 | 87.2 | 87.7 | 87.3 |
pX | 95.1 | 100 | 100 | 100 | 98.7 | 99.6 |
hexon | 89.4 | 90.2 | 98.4 | 90.5 | 90.6 | 90.4 |
protease | 95.4 | 96 | 95.4 | 99.8 | 96.5 | 96.5 |
22K | 89.9 | 100 | 98.8 | 100 | 99.3 | 99 |
pVIII | 95.6 | 98.4 | 98.5 | 98.4 | 98.3 | 97.7 |
12.2K | 93.2 | 96 | 97.5 | 96 | 96.9 | 96.9 |
CR1-α | 52.5 | 80.5 | 97 | 80.5 | 75.4 | 77.6 |
18.4K | 95.2 | 91.1 | 98.1 | 91.1 | 96.2 | 94.1 |
CR1-β | 100 | 74.5 | 85.1 | 74.5 | 64.5 | 58 |
CR1-γ | 86.4 | 75.3 | Ndc | 75.3 | 75.1 | 80.5 |
RID-α | 93.5 | 94.2 | 94.2 | 94.2 | 98.2 | 98.2 |
RID-β | 90.6 | 87.4 | 93.2 | 87.4 | 94.2 | 99.2 |
14.7K | 96.7 | 95.2 | 97.2 | 95.2 | 96.7 | 97.7 |
fiber | 100 | 75.1 | 67.6 | 75 | 69 | 67.6 |
dTPase | 100 | 48.4 | 88.9 | 48.4 | 85.1 | 85 |
Standard nomenclature has been applied so that orthologs have the same name (Davison et al., 2003). Numbers in bold reflect the proposed origin. Italics note the gene with supposed double origin.
Percent identities and similarities were determined by global alignment using the EMBOSS needle program with a gap penalty of 10.0 and a gap extension penalty of 5.0.
Not present in the genome.
Prototype HAdV-D8 strain is Trim isolate – ATCC VR-1604.